| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1953 |
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| Symbol | |
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| ID | 4022435 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 2190326 |
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| End bp | 2192578 |
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| Gene Length | 2253 bp |
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| Protein Length | 750 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637962146 |
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| Product | penicillin-binding protein 1A |
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| Protein accession | YP_569089 |
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| Protein GI | 91976430 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.330059 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCGAAGA TTCTGCCAGA CCGTTGGAAG CAGCGAATCC GGAACCGGCT TCTGGATTTC
GATGCGCGGA TCGACTCGAC GCTGTTCTCC TCCGCGGTCG GCATCCGCGA ATTGTGGGAG
CGCTTCTCCA CGTTCATGGA CCGTTTCTAT GTCGGTCGCT GGAAGCGCTG GGTGTTCATC
GAACCGCTGT CGGAAGCCGC GACGATCGGC GCCGGCGGGT TGTTAGTTCT GCTCGCGCTG
GCGCAGCCGG CGTTCCGCGA AACCGCCGAC GAGGACTGGC TGAAGAAATC CGACCTCGCC
GTCACCTTCC TCGATCGCTA CGGCAATCCG ATCGGCAGCC GCGGCATCAA GCACAACGAC
TCGATCCCGC TGGAAGATTT CCCCGACAGT CTGATCAAGG CGACGCTCGC CACCGAGGAC
CGCCGCTTCT ACGATCACTT CGGCATCGAC ATCGCCGGCA CCGCGCGCGC GCTGGTCACC
AACGCGCAGG CCGGCGGCGT GCGCCAGGGC GGCTCGTCGA TCTCGCAGCA ACTCGCCAAG
AACCTGTTTC TGTCGAACGA ACGCACGCTT GAGCGCAAGG TCAACGAGGC CTTCCTCGCG
ATCTGGCTCG AGACGCGACT CAGCAAGAAC GAGATCCTCA AGCTCTATCT CGATCGCGCT
TACATGGGCG GCGGCACCTT CGGCGCCGAC GGCGCGGCGC ATTTCTACTT CAATAAATCG
GTGCGCGACG TGAACCTCGC CGAGGCCGCA ATGCTGGCCG GTCTGTTCAA GGCGCCGACT
AAATTCGCGC CGCATATCAA CCTGCCCGCA GCCCGCGCCC GCGCCAATGT GGTGCTCGAC
AATCTGGTCG ACGCCGGCTT CATGACCGAG GGCCAGGTGT TCGGCGCGCG GCGCAATCCC
GCTTCGGTGG TCGATCGCCG CGACGAGAAT TCGCCGAACT ACTATCTCGA CTGGGCGTTC
GACGAAGTCC GCAAGGTCGT CGAGACGTTC CCGAAATCCT ACACCGAGCG CGTGTTCGTG
GTGCGCACCA CGATCGACAC GAACGTGCAA CGCGCGGCCG AGGCCGCGAT CGAAAACCAG
CTTCGCCAGT TCGGCCGCGA TTATCACGCC ACCCAGGCCG CAACAGTGCT GTCCGATCTC
GACGGCGGCG TGCGCGCCAT GGTCGGCGGC CGCGACTACG GCTCCAGCCA GTTCAACCGC
GCGGTCGACG CCTATCGCCA GCCCGGTTCG TCGTTCAAGC CGTATGTCTA CACGACGGCG
CTGCTCAACG GCTTCAAGCC CACGTCGATC GTGGTCGACG GCCCGGTCTG CATCGGCAAC
TGGTGCCCGC AAAACTACGG CCACTCCTAC TCCGGCTCGG TGACGCTGAC GCAGGCGATC
ACGCGCTCGA TCAATGTCGT GCCGGTGAAG CTCTCGATCA CGCTCGGCGG CAAGGCCGGG
CCGAAGGCCG GCCGCGCCAA GATCGTCGAA GTCGCGCGCC GCTTCGGCAT CAAGGCGCCG
CTGATCGACA CCCCGTCGCT GCCGATCGGC TCGACCGAAG TCACCGTGCT CGAACACGCC
GTCGCCTACG CGACCTTCCC GAACAAGGGC AAGGCGCCGA CGCCGCATGC GGTGCTGGAA
GTCCGCACCG GCGCCGGCGA TCTGGTATGG CGGTTCGATC GTGACGGCCC GAAGCCGCGA
CAGGCGATCC CCGCTTCGGT CGCCGCCGAC ATGGCCGGCA TGATGAGTCA CGTCGTCAGC
GAAGGCACCG CGCGGCGCGC CGCGCTCGAC GGCATTCCGA CCGCGGGCAA GACCGGAACC
ACGAATGCTT ATCGCGACGC CTGGTTCGTC GGCTACACCG GCAATTTCAG CTGCGCGGTG
TGGTACGGCA ACGACGACTA CTCGCCGACG AACCGGATGA CCGGCGGCTC GCTGCCGGCG
CAGACCTGGC GCGACATCAT GATCGCGGCG CATCAGGGCG TCGAGGTCTC CGAGCTGGCC
GGCGTCGGCA TGGGCACCAG GCTTCCTGCC TCGCCGGCCC AGGCCAATGC GCGCGCTGCC
GATGACGACG CCAAGCCGGC GCCGCCGCCG GTGCTGACGC GGCGCGGCGC GGACATTCTG
GCGCGCTTGG AAAAGATGCT CGACGACGCG GCGAAGGCGA TAGACAAGAC CGAGCCCGGC
AAGCCGGTGT CGTCGACCAC TGTCGGATTC CCGGACAACT TCGCGGCGGC GTCGCCAGGC
GGAGCGCCGG CATCCGGACC GCGCAAGAAC TGA
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| Protein sequence | MPKILPDRWK QRIRNRLLDF DARIDSTLFS SAVGIRELWE RFSTFMDRFY VGRWKRWVFI
EPLSEAATIG AGGLLVLLAL AQPAFRETAD EDWLKKSDLA VTFLDRYGNP IGSRGIKHND
SIPLEDFPDS LIKATLATED RRFYDHFGID IAGTARALVT NAQAGGVRQG GSSISQQLAK
NLFLSNERTL ERKVNEAFLA IWLETRLSKN EILKLYLDRA YMGGGTFGAD GAAHFYFNKS
VRDVNLAEAA MLAGLFKAPT KFAPHINLPA ARARANVVLD NLVDAGFMTE GQVFGARRNP
ASVVDRRDEN SPNYYLDWAF DEVRKVVETF PKSYTERVFV VRTTIDTNVQ RAAEAAIENQ
LRQFGRDYHA TQAATVLSDL DGGVRAMVGG RDYGSSQFNR AVDAYRQPGS SFKPYVYTTA
LLNGFKPTSI VVDGPVCIGN WCPQNYGHSY SGSVTLTQAI TRSINVVPVK LSITLGGKAG
PKAGRAKIVE VARRFGIKAP LIDTPSLPIG STEVTVLEHA VAYATFPNKG KAPTPHAVLE
VRTGAGDLVW RFDRDGPKPR QAIPASVAAD MAGMMSHVVS EGTARRAALD GIPTAGKTGT
TNAYRDAWFV GYTGNFSCAV WYGNDDYSPT NRMTGGSLPA QTWRDIMIAA HQGVEVSELA
GVGMGTRLPA SPAQANARAA DDDAKPAPPP VLTRRGADIL ARLEKMLDDA AKAIDKTEPG
KPVSSTTVGF PDNFAAASPG GAPASGPRKN
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