Gene RPD_1895 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1895 
Symbol 
ID4022377 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp2127302 
End bp2129026 
Gene Length1725 bp 
Protein Length574 aa 
Translation table11 
GC content65% 
IMG OID637962088 
Productsodium/hydrogen exchanger 
Protein accessionYP_569031 
Protein GI91976372 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4651] Kef-type K+ transport system, predicted NAD-binding component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.49823 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.375408 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACGAAC TAATTCGCGA CATCACGCTG TGCATCCTGT TCGCCTGGAT GCTTGGGCTG 
TCGGCGCATT TTTTCCGTCA GCCACTGATC CTCGCCTACC TTATCGCCGG CTTTGCGATC
GGTCCATTCG GCCTCGGTCT GGTGCGATCG CAGGACTCGA TCTCGGTGAT CTCCGAGCTC
GGTTTGATCT TCATGCTGTT CATGATCGGA CTCGAGATCG ACCTGAAGAA GGTCGTCCGC
GCCGGCAGCG TGATTCTGGT CGCCGCCGGC GGACAGTTGA TCGGCGGATG CCTGCTCGGC
CTCGCGTTCT TCTTCGGCAT CGGCCTGTCG ATCGGCGGCG GACAGTTCGA CGCGGTCTAT
CTCACCGTCG CCTGCGCGCT GTCCTCCACC GTCATCATCG TCAAGGTGCT GTACGAAAAG
CGCGAGCTCG ACACCCTGCC CGGCCGGCTC ACGCTCGGCG TGCTGGTGCT GCAGGACATC
TTCGCGATCC TGTTCCTGGC GGTGCAGCCG AGCCTCGCCG ATCTGCAGGT CAGCGTGCTG
CTGCTGTCGA TCGGCCGCGT CGCCATGCTG GTTGCCACGG CTCTGGTGCT GAGCCGCTAC
GTGCTGCCCT GGCTGTTCCA CCGCATCGCG CGCACGCCGG AGCTTGTGCT GCTCGGCGCG
CTGGCGTGGT GCTTCCTGAT CGGCGAGATC GCCGAGCGGC TGCATCTGTC GCGCGAGATG
GGATCGCTGG TCGCCGGCGT GTCGCTGTCG ACCTTCCCCT ATGCGCTCGA CGTCACCGCC
AAGGTGACGA CACTGCGGGA CTTCTTCATC ACGCTGTTCT TCGTCGCGGT CGGCATGACG
ATCCCGATCC CGAACGGGTC GGTGATCATG CTGGCGCTGG CGATCGCCGC CTTTACAGTG
GTCAGCCGGG TCGTCACCAC CTTCCTGCCG CTGTATCTGA TGCGCCAAGG CCTGCGCGCC
AGTCTGCTGC CGGCGCTGAA CCTGGCGCAG ATTAGTGAGT TCTCGCTGGT GGTGATCCAG
ACCGGCATCG CCGCCGGCCA CATCCGCACC GAGACCGCGA GCGCCGCGTC GTTCGCCTTC
GTGTTGCTGG CGGTGCTGTC GACCTTCGTC ATGGTGCGCA GTGATCCGAT CACCCGCCGC
GCGATCCGCT TGCTGAAGGC GCTCGGCCTG CGCGATCTCG ACCACAGAGC GGCCGATCCC
GAGGACGAGG CCAGCCACGG CGCGGTGCGT CGGATCGTGA TCCTCGGCTT CTTCCGCGCC
GCCAGCGCGC TGATCAGCGA GATTGAGCGG CAGAACGAGG AGCTGTTGAA GCAGATCAGC
GTGATCGACT TCAATCCAAA CGTCTATCGC ACCCTCGTCG CGCGCGGCAT GCACGTCATC
TACGGCGACA TCAGCAGTGC CGACACGTTG CTGCACGCCG GCGTCGGAAA GGCCGAGATC
ATCATCCTCA GCGTGCCGGA TTCGCTCTTG AAAGGCGCGA CCAACGAGCG GCTGGTGCGC
CACGTCCGGG CGCTCAATCC GACCGCGCGG ATCATCGCAA CCGCGGATCT TCTGGCGGAT
GTCGCTACGC TATACGCGGC CGGCGCGAAT TACGTCACGG TGACCCGGAT CAGCGACGCA
AACGAATTGT TCAGCGCGAT CGAGGCCGCC GATAACGGCC TGCTCGACGA CAAGCGGGTC
GCGTTCGACG CCCGCCTCGC CGAACGGCGC GAAGTGTTGC CGTAG
 
Protein sequence
MHELIRDITL CILFAWMLGL SAHFFRQPLI LAYLIAGFAI GPFGLGLVRS QDSISVISEL 
GLIFMLFMIG LEIDLKKVVR AGSVILVAAG GQLIGGCLLG LAFFFGIGLS IGGGQFDAVY
LTVACALSST VIIVKVLYEK RELDTLPGRL TLGVLVLQDI FAILFLAVQP SLADLQVSVL
LLSIGRVAML VATALVLSRY VLPWLFHRIA RTPELVLLGA LAWCFLIGEI AERLHLSREM
GSLVAGVSLS TFPYALDVTA KVTTLRDFFI TLFFVAVGMT IPIPNGSVIM LALAIAAFTV
VSRVVTTFLP LYLMRQGLRA SLLPALNLAQ ISEFSLVVIQ TGIAAGHIRT ETASAASFAF
VLLAVLSTFV MVRSDPITRR AIRLLKALGL RDLDHRAADP EDEASHGAVR RIVILGFFRA
ASALISEIER QNEELLKQIS VIDFNPNVYR TLVARGMHVI YGDISSADTL LHAGVGKAEI
IILSVPDSLL KGATNERLVR HVRALNPTAR IIATADLLAD VATLYAAGAN YVTVTRISDA
NELFSAIEAA DNGLLDDKRV AFDARLAERR EVLP