| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1815 |
|---|
| Symbol | |
|---|
| ID | 4022297 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 2032173 |
|---|
| End bp | 2033771 |
|---|
| Gene Length | 1599 bp |
|---|
| Protein Length | 532 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637962009 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_568952 |
|---|
| Protein GI | 91976293 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGATTT TGAACAAAAC GGGGTTGCAT GCGGCCGCCG CTTGCATCCT CGCCCTCGCC
ACTCCCGCCT CCGCGCAGAC ATTGCGCTAC GCAAATCAGG GCGACCTCAA TTCGCTCGAT
CCCTACACGC TGAAAGAGAC CACGACGATT GCGCATCACG CGCACATCTA TGAAGGGCTC
ATCACCCGCG ACAAGGATCT CAAGATCGTT CCGGCGCTGG CGGAAAGCTG GGAAACGCTC
GACCCGAAGC ACTGGCGCTT CCATCTGCGC AAGGGTGTGA AATTCCACAA CGGCAATCCG
TTCACCGCGG ACGACGTGAT CTTCTCCGCC GAACGGGTGC GCGCCAAGGG CTCGAACTAT
CTCTCCAACG TCCCGTCCGA CGCCAAATTC GTCAAGATCG ACGACCACAC CGTCGACGTG
TTGCTCGATA CGCCAAATCC CATTCTGGTC TCGCAATGGG ACAACTGGTT CATCATGGAC
AAGGAGTGGT GCACCGAGAA CAATTCGGTA GCGCCGACGC CGGCCGCCGC GACGACGCCG
AGCTATGCAT CGCTGCATGA GAACGGCACC GGTCCGTTCG TGATCGACCT TCATCAACCC
GGCGTGAAGA CCGTGTTCAA GGCCAATCCG AACTGGTGGG GCAAGCCCGA GCATAATCTC
AAGGAAATCG TGTTCACGCC GATCGGCTCG GCCGCGACGC GCGTCGCCGC GCTGCTGTCC
GGCGAGGTCG ACCTTATCGA GCCGGTGCCG ATCCAGGACA TCGAGCGCGT CAATGGCAGC
GGCACGGCGA CGGTGCTGAC CGGGCCGGAA CTGCGCACGA TCTTCCTCGG GATGGATCAG
AACCGCGACG AACTGCTGTA CTCCAACGTC AAGGGCAAGA ACCCGTTCAA GGACATCCGC
GTCCGCGAGG CATTCTACAA GGCGATCGAC GTCGATCTGA TCAAAACGCG GGTGATGCGC
GGGCTGTCGA CGCCCACGGC GCTGATGATC GCGCCGCAGT TGTTCTCGCT GTCGAACGAC
TTCACCCGGC CGAAGTCCGA CGCCGCGGCG GCGAAGAAGC TGTTGGCCGA GGCCGGCTAT
CCCGACGGCT TCGAAGTCAC GATGGATTGC CCCAACGATC GCTACGTCAA CGACGCGGCG
ATATGCCAGG CGGCGGTCAG CATGCTGGCG CGGATCGGCG TCAAGGTCGA ACTGCTGGCG
CAGCCGAAGG CGCAATATTT CGCCAAGGTT CTGAAACCCG GCGGCTTCAA GACCTCGTTC
TTCATGCTGG GCTGGACTCC CGCGTCGCTC GACTCGCACG GCGTGCTGCA CGACGTCATG
GGCTGCGGCA ACGACCCGAC CGACGCGACC CGCGGCGAAG CCAATCTCGG CGGCTATTGC
AACAAGGAGC TCGACGCACT CACCGACAAG GTTCTGATCG AGACCGACCC CGGCAAGCGC
GACCAGTTGA TCAAGCAGGC ATACGAGATC GGCATCAAGG ACTATTCGTA CATCCCGCTG
CACCAGCAGG CGCTGGCCTG GGGCGTGTCG AAAAAGGTGA AGCTGACCCA GCGCGCCGAC
AATCGGGTGC TGCTGCATTG GGCGACCAAG CAAGATTGA
|
|---|
| Protein sequence | MTILNKTGLH AAAACILALA TPASAQTLRY ANQGDLNSLD PYTLKETTTI AHHAHIYEGL
ITRDKDLKIV PALAESWETL DPKHWRFHLR KGVKFHNGNP FTADDVIFSA ERVRAKGSNY
LSNVPSDAKF VKIDDHTVDV LLDTPNPILV SQWDNWFIMD KEWCTENNSV APTPAAATTP
SYASLHENGT GPFVIDLHQP GVKTVFKANP NWWGKPEHNL KEIVFTPIGS AATRVAALLS
GEVDLIEPVP IQDIERVNGS GTATVLTGPE LRTIFLGMDQ NRDELLYSNV KGKNPFKDIR
VREAFYKAID VDLIKTRVMR GLSTPTALMI APQLFSLSND FTRPKSDAAA AKKLLAEAGY
PDGFEVTMDC PNDRYVNDAA ICQAAVSMLA RIGVKVELLA QPKAQYFAKV LKPGGFKTSF
FMLGWTPASL DSHGVLHDVM GCGNDPTDAT RGEANLGGYC NKELDALTDK VLIETDPGKR
DQLIKQAYEI GIKDYSYIPL HQQALAWGVS KKVKLTQRAD NRVLLHWATK QD
|
|---|
| |