| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1809 |
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| Symbol | |
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| ID | 4022291 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 2023647 |
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| End bp | 2024840 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637962003 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_568946 |
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| Protein GI | 91976287 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATTG CGACAGAAAA CCCGTCCGCC GCGCGGTCGA CCCCCGAAAA GCCGCGTCCC
CGCCCGGTGC GGATGACCCG ATGGATCATC ATCGTCGGGC TGCTGCTGGC GCTGCTCGTC
GGCGGGCTGG TCGGCTTCAA CGCCTTCCGC AGCCACATGA TCGCGCAGTT CTTCGCCAAC
AACAAACCGC CGCCGATTAC GGTGTCGGTC GCCGAGGCGA ACGCCGAGGT GGTGCCCAAT
CTGCTGACCG CGGTCGGCGA TCTCGCCGCC GTGCACCAAG TCAACGTCAC CTCCGACGTC
AACGGCCGTA TCACCGATAT CCTGTTCACC GCGGGCGCCG AGGTGAAAGC CGGCAGCAAG
CTGTTGCAGC TCTACGATGC GCCGGAGCAG GCCGACCTCG CCAATTTCAG GGCGCAGGCG
AAGGTGGCCG AGCTGTCGCT CGACCGCGCC AAGCAGCTCG CCGCGCGGCA GTTCGGACCG
CAGGCGACCG TCGATCAGGC CCAGGCGTCG TTCGATCAGG CCAGTGCCGG CATCGCGCGA
ACCGAAGCGG TGATCTCCCA GAAGCTGGTG CGGGCGCCGT TCGACGGCGT GCTCGGCGTG
CGTCGCGTCG AGGTCGGCCA GTATCTCACC GCCGGCACCC AGATCGTCAC GCTGACGGAT
CTGTCGCGGG TCTATACGAA CTTCACCGTG ACCGAAAAGG ACAGCGGCAC GCTGAAGGTC
GGGCAGGTCG TTCGCGTCTC GGTCGACGCC TATCCGGGCA AGGTGTTCGA AGGCAAGATC
ACCACGATCG AGCCGCAGAT CAGCTCCGAC ACTCGCAACA TCCGGGTTCA GGGCACGCTG
GAGAATCCCG AGAAGATCCT GAAGCCGGGC ATGTTCGCGA CCACGACGGT GGTGCTGCCG
GAGAAGCCGG CGGTGGTCAC CGTTCCGGAA ACCGCGGTCG ACTACACGCT GTACGGCGAC
TCCGTCTTCC TCATCCACGA GGAGAAGGCC GAGGACGGCA AGATCAATCT CACCGCGGTG
CGGACCTTCG TTCGCACCGG TGACCGGGTC AACGGCCGCG CCGTGATCCT TAGCGGCGTG
AAGGCCGGCG ACCGCGTCGT CGCGGTCGGC CAGCTCAAGC TGCAGTCCGG CGCCGCGGTC
GCGATCTCGA AGGATCCGAT GCCGCAGATC CCGGCGAAGC CGCCGCGATA CTGA
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| Protein sequence | MTIATENPSA ARSTPEKPRP RPVRMTRWII IVGLLLALLV GGLVGFNAFR SHMIAQFFAN
NKPPPITVSV AEANAEVVPN LLTAVGDLAA VHQVNVTSDV NGRITDILFT AGAEVKAGSK
LLQLYDAPEQ ADLANFRAQA KVAELSLDRA KQLAARQFGP QATVDQAQAS FDQASAGIAR
TEAVISQKLV RAPFDGVLGV RRVEVGQYLT AGTQIVTLTD LSRVYTNFTV TEKDSGTLKV
GQVVRVSVDA YPGKVFEGKI TTIEPQISSD TRNIRVQGTL ENPEKILKPG MFATTTVVLP
EKPAVVTVPE TAVDYTLYGD SVFLIHEEKA EDGKINLTAV RTFVRTGDRV NGRAVILSGV
KAGDRVVAVG QLKLQSGAAV AISKDPMPQI PAKPPRY
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