| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1561 |
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| Symbol | |
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| ID | 4022041 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 1750060 |
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| End bp | 1751811 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637961756 |
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| Product | Type I secretion system ATPase, PrtD |
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| Protein accession | YP_568699 |
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| Protein GI | 91976040 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.323729 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAGC CGAAAGAACT TTCGTCTGCG AAGCGGCGAA ATCTCGCCGA GCTGACCCGT
GGTTTGCGCG GCGTTGCGAT CTTCCTGTTT CTGGTCTCCG GGATGATCAA TATTCTGGCG
CTGACCGGAT CGCTGTACAT GATGCAGATC TACGATCGCG CGCTCACCAG CGGCAGTATT
CCAACGTTGC TGCTGCTGTC GGCGCTCGCA GCCGGACTCT ACCTTTTCCA GGGCTGCTTC
GACGTGATCC GGTCGCAGGT GCTGGTGCGG GTCGGCGCGC GGCTCGACAA GAAGATCGCG
CCGCTGGCGC ACCGCGTCGC GATCGACATG CCACGGTTCG GCTTCTCGAC CTCCGAAGCG
CTCGAGCGCG GTCGCGACGT CGACACGGTT CGCGGATTCC TTGGCAGCCA GGGTCCGTCC
GCGCTGTTCG ATCTGCCGTG GATGCCGATC TATCTCGTCT TCATCTACTT CCTGCACCCG
CTGCTCGGGG CGCTCACCTT CGCCGGTGCC TTCGTGCTGA CGATCATGAC GGTCGTCAGC
GAGGTCCTGA CCAAGCGCCT CAGCATCGCC ACCCGCAAGG CGGCGATGGC GCGCAACACC
ATCGCGGATT GCAACGCGCG CAATGCCGAA GTGCTGAAGG CGATGGGATT CGCAGATCGT
GCCGTCAGTC GGTTCAATAT CGCCAATGGC GAGCACCTCG AGTTGCAGAC CAAGGCAAAC
GACATCACCG GCAATTTCGC GGCGGTGTCG CGGGTGTTGC GGATGCTGCT GCAGTCGGCG
GTGCTTGGTC TTGGCGCCTA CCTCACGATC AAGAACGAGC TGTCGGCCGG CGCGATCATC
GCCTGCTCGG TGGCTTCGGC GCGCGCGTTG GCGCCGGTCG ATCTCGCGAT CGGCAACTGG
AAGTCCTTCA TCGCAGCGCG CATGGCTTAT CACCGCCTGC GCGACACCGT GGTGGCGCTC
GCTTCGGCAG ACGAACCGAT GCAACTGCCG CCGCCGAAGA ATCGCCTCAC CGTGGAGAAG
GCGACGATCG CCGTGCCGGG CACCGGCCAG ATCGTGCTCA GCGATGTCAG CTTCGAACTC
GAGGCCGGGC AGGCGCTCGG GGTGATCGGC CCGAGCGCCG GCGGCAAGAC CACCCTGGTC
CGCGCGCTGA CCGGGATCTG GCCACTGCTA CGCGGCAGCG CGCGGCTTGA CGGCGCTGAT
CTCAGCCAGT GGCGCGAGGA CGAGATTGGA CGGCACATCG GCTATCTGCC GCAGGAAGTC
AGCCTGATGG ACGCGACCAT CGAAGAGAAC ATCTGCCGCT TCGAGCCGCA GCCCGACTAT
CGCAAGGTGG TGGAAGCGGC CAAGGCGGCC GGCGTGCACG AGATGATCGT CAAGTTGCCG
GACGGTTATC GAACCCAGCT CGGCCCGCAG GGTTCGTCGC TGTCGGCCGG CCAGCGTCAG
CGCGTCGCGC TGGCGCGGGC GCTGTACGGC AATCCGTTCA TTGTGGTGAT GGACGAGCCG
AACTCGAATC TCGACGGCGA GGGTGAAGCA GCGCTCACCG CCGCGATCGA AGGGATTAGC
GCGCGTGGCG GCATTACCGT CGTCATCGCG CATCGGCCGA GCGCCCTGGT GGCGGTTGAT
CTGGTGGCGA TCGTCCAGGG TGGACGCATG GTCGCGTTCG GCAAGAAGCA GGACATCATG
ACGCCGGGCC TGCAGCCGCA GGCGCGGCCG GCGGCCGAAG AGCCGCAGGA ACTGATCCGG
AGGCCGGCAT GA
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| Protein sequence | MAKPKELSSA KRRNLAELTR GLRGVAIFLF LVSGMINILA LTGSLYMMQI YDRALTSGSI
PTLLLLSALA AGLYLFQGCF DVIRSQVLVR VGARLDKKIA PLAHRVAIDM PRFGFSTSEA
LERGRDVDTV RGFLGSQGPS ALFDLPWMPI YLVFIYFLHP LLGALTFAGA FVLTIMTVVS
EVLTKRLSIA TRKAAMARNT IADCNARNAE VLKAMGFADR AVSRFNIANG EHLELQTKAN
DITGNFAAVS RVLRMLLQSA VLGLGAYLTI KNELSAGAII ACSVASARAL APVDLAIGNW
KSFIAARMAY HRLRDTVVAL ASADEPMQLP PPKNRLTVEK ATIAVPGTGQ IVLSDVSFEL
EAGQALGVIG PSAGGKTTLV RALTGIWPLL RGSARLDGAD LSQWREDEIG RHIGYLPQEV
SLMDATIEEN ICRFEPQPDY RKVVEAAKAA GVHEMIVKLP DGYRTQLGPQ GSSLSAGQRQ
RVALARALYG NPFIVVMDEP NSNLDGEGEA ALTAAIEGIS ARGGITVVIA HRPSALVAVD
LVAIVQGGRM VAFGKKQDIM TPGLQPQARP AAEEPQELIR RPA
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