Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_1500 |
Symbol | |
ID | 4021979 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 1671362 |
End bp | 1672144 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637961694 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_568638 |
Protein GI | 91975979 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGATCTGG GAATCAAAGG CCGCCGCGCA CTGGTTTGCG CATCGAGCAA GGGATTGGGA CGCGCCTGCG CCGCCGCGCT TGCGGCCGAG GGCGTCCATG TCACCATGAC GGCGCGCGGA GCCGAAGCGC TGGCGCAGGC GGCCGCGGCT TTGCGCCTGG CCTACCCCGA CGTCGAAATC CTCGAAGTGG CCGGCGATAT CACCACGCCG GAAGGCCGCG AGGCCGCGCT GAAAGCCTGC CCGGAGCCGG ACATCCTGGT CAACAACGCC GGCGGGCCGC CGCCCGGGGA TTTTCGCAAC TGGAGCCGCG CCGATTGGAT CAAGGCGCTC GACGCCAACA TGCTGACGCC GATTGAATTG ATCAAGGCGA CGGTCGACAC GATGATCGCC CGCAAATTCG GACGTATCGT CAACATCACC TCGGCCGCCG TGAAGGCGCC AATCGATGTG CTCGGCCTGT CCAACGGCGC GCGCACCGGC CTGACCGGAT TCGTCGCCGG CTTGTCACGC AAGACGGTGC GGCACAACGT GACGATCAAC GCGCTGCTGC CGGGTCCATT CGACACCGAC CGGCTGCGCG GCGTTTCCGC AGGTCAGGCC AAGGCGTCGG GCGTCCCCGT CGAGCAGATC CTTCAGACGC GGATGAACGA GAACCCTGCC GGCCGCTTCG GGGATCCCGA GGAGTTCGGG CTGGCCTGCG CGTTCCTATG CGGCGCACGA TCGGGCTATA TCACCGGCCA GAACATCCTG CTGGACGGCG GTGCATTTCC CGGCACGCTG TGA
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Protein sequence | MDLGIKGRRA LVCASSKGLG RACAAALAAE GVHVTMTARG AEALAQAAAA LRLAYPDVEI LEVAGDITTP EGREAALKAC PEPDILVNNA GGPPPGDFRN WSRADWIKAL DANMLTPIEL IKATVDTMIA RKFGRIVNIT SAAVKAPIDV LGLSNGARTG LTGFVAGLSR KTVRHNVTIN ALLPGPFDTD RLRGVSAGQA KASGVPVEQI LQTRMNENPA GRFGDPEEFG LACAFLCGAR SGYITGQNIL LDGGAFPGTL
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