| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1469 |
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| Symbol | |
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| ID | 4021948 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 1637656 |
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| End bp | 1638921 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637961663 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_568607 |
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| Protein GI | 91975948 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.910926 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCTTC ATGCGGACCA GCCGGTTGGC GCGGCGCCGG CCTCGAGCTT GAGCCATTGG
CTGAGCGCGG CCTGGCGGCG CAAATGGTCG GTGCTCGGCA TTGCGCTGGT GCTGCTCGCC
GCGGGGCTTG GTCTGGCCCG GCTGATGTTC GGTCCGCAAG TCATCGCCGT CCTGGTGGAG
CGCGGCAATC TCGTGCAGAC GGTGGTCGCC AGCGGCCACA TCGAGACCCC CTACCGGGTC
GAGATCGGCA GCCAGATCAC CGGCACCGTC GCCGACGTGC TGGTGCGCGA AGGCCAGGAG
GTCCGCGAGG GCCAGAAGCT GGTCGCGATC GAGGCCAGCG AGCTGCAGGC CGCAATGGTG
CAGGCCGAGG GCGCGGTGGC GCAGGCCGAG GCGCGGGTGC GCCAGCTCCG CGAGCTGACC
AAGCCGGCCG CCGATCAGGC GCTGCAGCAG GCGCACGCCA ATCTGCTCAA TGCGGAAGCC
GCCTATGAGC GCGCGTCGAA GCTCGCCGCG TCGGGCTACG GCACCAAGGC GACGCTCGAC
GACGCCACCA AGAATCTCGA CGTCGCTCGC ACCCAGGTCC GCACCGCCGA GCTGCAGGTC
TACACCTCGA GCCCGGTCGG TAGCGATTAT GTGATGGCCG AGACCCTGCT CGGTCAGGCC
CGCGCCAATC TCAACACCGC ACGCGCACGG CTCGGTTACG CCAGCATCGT CGCGCCGCGC
GACGGCGTGC TGATCACCCG CAAGGTCGAG CGCGGCAGCG TGGTACAGCC GGGCAAGGCG
CTGCTGGTGT TGGCGCCGGC CGGCGACAGC CAGATCGTGG TGCAGATCGA CGAGAAGAAT
CTCGGCCAGC TCGCGCTCGG CCAGAGCGCG CTGGCCTCGG CCGACGCCTA TCCCGACAAG
CGGTTCGCGG CGCGGCTCAG CTACATCAAC CCGTCGGTCG ACATCAACCG CGCCTCGGTC
GAGATCAAGC TCGCAGTGAC CGACCCGCCG AACTATCTGC GCCAGGACAT GACGGTGTCT
GTCGACATCG CCACCGCCCG TCGCGAAAAT GCGGTGATCG TCCCGGCGCG GGCGGTCAAC
GACGCGACGA CGGTGCCCTA TGTGCTGAAG GCCGAGAACG GCCGCGCAAT CCGGCAGCCG
GTCAGGCTCG GCCTGCGTGG CGTCGGCGCC TATGAAGTGA TCGAGGGGCT CGTGCCGGGC
GACCGGGTGA TCCCGCTCAC CACCGGCGTC AAGCCCGACC AACGCATCCG CGTGGTCGTG
CCGTGA
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| Protein sequence | MDLHADQPVG AAPASSLSHW LSAAWRRKWS VLGIALVLLA AGLGLARLMF GPQVIAVLVE
RGNLVQTVVA SGHIETPYRV EIGSQITGTV ADVLVREGQE VREGQKLVAI EASELQAAMV
QAEGAVAQAE ARVRQLRELT KPAADQALQQ AHANLLNAEA AYERASKLAA SGYGTKATLD
DATKNLDVAR TQVRTAELQV YTSSPVGSDY VMAETLLGQA RANLNTARAR LGYASIVAPR
DGVLITRKVE RGSVVQPGKA LLVLAPAGDS QIVVQIDEKN LGQLALGQSA LASADAYPDK
RFAARLSYIN PSVDINRASV EIKLAVTDPP NYLRQDMTVS VDIATARREN AVIVPARAVN
DATTVPYVLK AENGRAIRQP VRLGLRGVGA YEVIEGLVPG DRVIPLTTGV KPDQRIRVVV
P
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