Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_1411 |
Symbol | |
ID | 4021888 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 1578029 |
End bp | 1579927 |
Gene Length | 1899 bp |
Protein Length | 632 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637961603 |
Product | peptidase M3B, oligoendopeptidase-like clade 3 |
Protein accession | YP_568549 |
Protein GI | 91975890 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1164] Oligoendopeptidase F |
TIGRFAM ID | [TIGR02290] oligoendopeptidase, pepF/M3 family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.249086 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGAAAG CTGTAACCTC CCGCACCGTC AAGACTTCCC GTAAGCCGTC GTCGCGCAAA TCGGCGCCCG CCAAGTCGAC CAAGCCCGCC AGCAAGAAAT CCGCCTCCGC GGCGAGCCGG AAGCCGGCCA AGCTGCCGGA ATGGAATCTG GCGGATCTGT ACCCGGCGAT CGATGCGCCG CAGGTTGCCG CCGATCTCGA CCGGCTGGAT GCGGATTGCG CCTCGTTCGA AGCCGACTTC AAGGGCAAGC TCGCCGAGGA GGCCGTAAAG GACGGCGGCG GCGCGTGGCT GGCTTCCGCG GTCAGGCGCT ACGAGGCGAT CGAGGACCTC GCAGGAAGGC TCGGCTCCTA TGCGGGCCTC GTCCATGCCG GCGACAGCGT CGATCCGGTC AAGTCGAAAT TCTACGGCGA CGTGTCCGAG CGGCTGACCG CGGCGTCGGT GCATCTGCTG TTCTTCGCGC TGGAACTCAA CCGCGTCGAC GACGAGGTGC TGGAGCGCGC GATGCAGACG CCCGAACTCG GCCACTACCG GCCGTGGATC GAGGATCTGC GCAAGGACAA GCCGTATCAG CTCGAAGATC GCGTCGAGCA ACTGTTCCAC GAGAAGTCGC AGACCGGCTA CGGCGCCTTC AACCGGTTGT TCGATCAGAC CATCTCCAGC CTGCGCTTCA AGGTCGGCGG CAAGGAACAG GCGATCGAGC CGACGCTGAA CCTGTTGCAG GACCGCACGC CTGCGAAGCG CAAGGCGGCG GCCGACGCTT TGGCCAAGAC CTTCAAGGCG AATGAGCGCA CCTTCGCGCT GATCACCAAC ACGCTGGCCA AGGACAAGGA GATTTCCGAC CGCTGGCGCG GCTTCGAGGA CGTCGCCGAT TCACGCCACC TCAACAACCG CGTCGAGCGC GAGGTGGTCG ACGCGCTGGT CGCTTCGGTG CGCGGCGCCT ATCCGCGGCT GTCGCATCGC TACTACAAGC TCAAGGCCGG CTGGTTCGGC AAGAAGAAGC TGCCGCATTG GGATCGCAAT GCGCCGCTGC CGTTCGCGGC GACCGGCAGC ATCGCCTGGC CGGAAGCGCG CAATATGGTG CTGACTGCCT ACAACGCGTT CTCGCCGGAG ATGGCGCGGA TCGCCGAGCG TTTCTTCACC GATCGCTGGA TCGATGCGCC GGTACGTCCG GGCAAGGCGC CGGGCGCGTT CTCGCATCCG ACCACGCCCT CGGCGCATCC CTATGTGCTG ATGAACTACC AGGGCAAGCC GCGCGACGTG ATGACGCTCG CCCACGAACT CGGCCACGGC GTGCATCAGG TGCTCGCCGC CGGCAACGGC GCGCTGATGG CGCCGACGCC GCTGACATTG GCCGAGACCG CCAGCGTGTT CGGCGAGATG CTGACCTTCC GCCGTCTGTT GGCGCAGACC AAGAGCGCCA AGCAGCGCCA GGCGCTGCTC GCCGGCAAGG TCGAGGACAT GATCAACACC GTGGTGCGGC AGATCGCGTT CTACTCGTTC GAACGCGCGA TCCACACCGA GCGCCGGGGC GGCGAACTCA CCGCGCAGCG CATCGGCGAG ATCTGGCTGA GCGTGCAGGG CGAAAGTCTG GGACCCGCGA TCGACATCCG TCCGGGTTAC GAGCACTTCT GGATGTACAT CCCGCACTTC ATCCATTCGC CGTTCTACGT CTACGCCTAT GCGTTCGGCG ACTGCCTCGT GAACTCGCTC TACGCGGTCT ACGAGAATGC CCAGGAAGGC TTCGCCGATC GCTACCTCGC GATGCTCTCG GCCGGCGGCA CCAAGCATTA CTCCGAACTG CTCGCGCCGT TCGGTCTCGA CGCCAAGGAC CCGACATTCT GGGACGGCGG TCTGTCGGTG ATCGCCGGCA TGATCGACGA GCTGGAGGAG ATGGGGTAG
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Protein sequence | MPKAVTSRTV KTSRKPSSRK SAPAKSTKPA SKKSASAASR KPAKLPEWNL ADLYPAIDAP QVAADLDRLD ADCASFEADF KGKLAEEAVK DGGGAWLASA VRRYEAIEDL AGRLGSYAGL VHAGDSVDPV KSKFYGDVSE RLTAASVHLL FFALELNRVD DEVLERAMQT PELGHYRPWI EDLRKDKPYQ LEDRVEQLFH EKSQTGYGAF NRLFDQTISS LRFKVGGKEQ AIEPTLNLLQ DRTPAKRKAA ADALAKTFKA NERTFALITN TLAKDKEISD RWRGFEDVAD SRHLNNRVER EVVDALVASV RGAYPRLSHR YYKLKAGWFG KKKLPHWDRN APLPFAATGS IAWPEARNMV LTAYNAFSPE MARIAERFFT DRWIDAPVRP GKAPGAFSHP TTPSAHPYVL MNYQGKPRDV MTLAHELGHG VHQVLAAGNG ALMAPTPLTL AETASVFGEM LTFRRLLAQT KSAKQRQALL AGKVEDMINT VVRQIAFYSF ERAIHTERRG GELTAQRIGE IWLSVQGESL GPAIDIRPGY EHFWMYIPHF IHSPFYVYAY AFGDCLVNSL YAVYENAQEG FADRYLAMLS AGGTKHYSEL LAPFGLDAKD PTFWDGGLSV IAGMIDELEE MG
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