Gene RPD_1282 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1282 
Symbol 
ID4021759 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1445629 
End bp1446252 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content62% 
IMG OID637961475 
Productputative outer membrane protein 
Protein accessionYP_568421 
Protein GI91975762 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3637] Opacity protein and related surface antigens 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.494917 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.183567 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTAAAT TTGCAATGGC CGCGGCGACC ATTCTCGCCG CAGGAGCTTC GACGGCACAG 
GCCGCGGACA TGGGCTATTA CGGCTCGCGG ACGCCCTACA CCGTCAATCA GCCGCTGAAT
GCCTTCAGCT GGGCCGGGCC GTATCTGGGC GGCAACCTCG GCTACTCGTT CGGCAATGTC
ACCAACAGCA TCACCAAGCC GTCCGGCTTC AACGGTGGCG TTCAGGGCGG CTATAACTGG
CAGAGCGGAA ACATCGTCTT CGGCCTCGAG GGCGACATTC AGTTCTCGAC CGCGGACGAC
ACCTTCGCGC CTTACAAGTT TTCGAACCCC TGGTTCGGGA CCGCGCGTGG TCGTGTCGGC
TACGCGATGA ACGACCTGCT GATCTACGCC ACCGGCGGTT TCGCTTTCGG TCAGTTGAAG
GGCGAGCGCC TGCTGTCGAC AGAGAGCCAC AGTTCCGCGG GCTGGACGGT CGGCGCCGGC
GCCGAATTCG CCTTCGCGCC GAAACTCAGC GCCAAGGTCG AGTATCTTTA CGGCAGCCTG
TCCACCAATA ACTTCTTCAT CACCGGTGCC CCGAACGGCT ACAATTTCGG GGTGGTGCGC
GCGGGCATCA ACTATCACTT CTAA
 
Protein sequence
MRKFAMAAAT ILAAGASTAQ AADMGYYGSR TPYTVNQPLN AFSWAGPYLG GNLGYSFGNV 
TNSITKPSGF NGGVQGGYNW QSGNIVFGLE GDIQFSTADD TFAPYKFSNP WFGTARGRVG
YAMNDLLIYA TGGFAFGQLK GERLLSTESH SSAGWTVGAG AEFAFAPKLS AKVEYLYGSL
STNNFFITGA PNGYNFGVVR AGINYHF