Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_1273 |
Symbol | |
ID | 4021750 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 1435147 |
End bp | 1437534 |
Gene Length | 2388 bp |
Protein Length | 795 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637961466 |
Product | pseudouridine synthase Rsu |
Protein accession | YP_568412 |
Protein GI | 91975753 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.897048 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCCGCG ACACCGATAA AAACAACGCC TCCGCGCGGG GCCGCCGCGA TCGACCCGGC GGAGGCAAGA CGTCTTCGGG CGGTAAAGGC GGTTTCGGGG GCAAAGGCGG CTTTGGCGGC AAAAGCGCAG GCGGCGGCAA AGGGCGTTCC GGAGCGGCCC GCGGCCCCGA GAAGAAATTC GCCAAACGCG GCGAGGGGAC CTTCGAGGCC CGCGCCGACA AGCCCTTCGC CAAGAAAACC TTCGGCGGCG ACGCCAAGCG CGCGTTCGGC GGCGAGGGCA AGCGGCCTTA TGTGAAGCGC GACGGCGCAG CCCCGCGCCG CGATTTCGCC GATCGGCCGC GCCGCGACGA TGGCGACGCG CCGCGTCCGC GCTTCAACCG CGACGAGCGC CCCGCGCGCA GCGGCGGCGA TCGCCCGGAA CGCGGCCCGC GCAAGGAGTT CGGCGAAAAG CGCGCATTCG CGCCCCGCGA GGGCGGCGAG AAGCGCCCCT ATACGCCGCG ACCGCCGCGC GACGACCGCG GCGGCGATCG GCCGTTCAAA CGCGACGATC GCGCCCCGCG GCGCGACCGC GGCGACGACG CCCGCCCGGC AGGGCGGTTC GGCGACAAGA AATTCGGTGA CAAGAAATTC GGCGAGAAGC GGCCTTACAC ACCGCGTGAG GGTGGCGACA AGCGTCCGTA TACGCCCCGC GAGGGCGGTG AGAAACGCCC CTATACGCCG CGTGAAGGCG GCGAAAAGCG GCCCTATGCA GCCCGCGAGG GTGGCGAGAA GCGTCCGTAT ACGCCCCGTG ACGGTGGCGA GAAGCGCTCT TACGCGCCCC GTGAGGGCGG CGACAAGCGG CCCTATACCC CGCGCGGCGA GGGCTTCCGC AAGGATGGCG AGCGGTCGCG GCCCACAGGG GATCGCCCGT TTGGCGCCCG CCCGTCGCGT GACGGCAAGT TCGGCGGCGA CAAGAAATTC GGCCGCGGCG CGCCGGATCG TGGCCCGCGC AAGGATTTCG GCAGCCGTCC CGATCGCGGC GGCGACCGCG GCGACGCCAA GCCTTGGCAG AAGCGCGACG GCGACTCCGC CGAGCGCGGG CGCAGCTTCG ACAAGCCGCG GTTCGACAAG CCGCGCGAGG AACGTGGCGG CGATCGCCCG CGATTTTCGC GCGACGATCG TCCCAAATTC GAGCGCCGCG AGCGCACCGG CGACTGGCAC GAGCATCCGC GCAACGAAGG CCCTTCGTCG GATCGTCCAC GCAGCCGGGA CAATGGCGAG CGCGGCTTCG ACCGGCCGCG CCGTGAAAAC GAGGACGAGA GCAAGATATT CGCCAAGCGC CCTGCCTTTG GCGGCCGCGG CGCCTATCGC GAGCGTCCCA AAACCGACCG TTCGAAGACC GAGCGGCGCG CCGCTCCGGC CCCGGCCAAG GCCGACAAGG CCGGCGACCG CATCGCCAAG GTAGTCGCCC GCGCCGGCCT GTGCTCGCGC CGCGACGCCG AGGCCTGGAT CGTCGAGGGC CGCGTCGCGG TCAACGGCCG CGTCATCGAT AGTCCGGCGC TCGACGTCAC CTATTCGGAC GTCATCACCG TCGACGGCAA GCCGTTGCCG GAGCGCGAGC GCACCCGGCT GTTTCTGTAT CACAAGCCGC GCGGCCTGAT GACCACCCAC GCCGACCCCG AGGGCCGGCC GACGGTGTTC GACAATCTGC CCGAAGACCT GCCGCGCCTG ATTTCGATCG GCCGGCTCGA TTTCAACACC GAGGGCCTGT TGCTGCTCAC CAATGACGGT GGGCTGGCGC GTGCGCTCGA ACTGCCGGAG ACCGGCTGGC TGCGGCGCTA TCGCGTCCGC GCGCATGGCG AAGTGACCCA GGCGCAGCTC GATCAGCTCG CCAGCGGCGT CGAGGTCGAC GGCGTCAAAT ACGGTCCGAT CGAGGCCAAG CTCGAACGCG ACCAGGGCGC CAATGTCTGG CTGGTGTTCG CGATCCGCGA AGGCAAGAAC CGCGAAGTCC GCAACGTGCT GGCGCATCTC GGGCTCGAGG TGAACCGGCT GATCCGCGTT TCCTACGGCC CGTTCCAGCT GCTCGAGATC GAGGAAGGCC AGGTCGAGGA GGTCAAGACG CGGGTGCTGC GCGAGCAGCT CGGCGAGAAG ATCATCAAGC TCGCCGAGGC CGATTTCGGC GGGCCGTCGC CGAGCGAGAC GCGGCCGAAG CCGCGCCCGG GCAAGCCCGT CGCCGCCGAG GACGGCCCCG CGCCGAAGAA GAAGGCCGTG GTCAAGCGCG GCGCCGTCGA GGACCGCAAG GGCCGCAAGG TCAAGGTCGA ACGCACCGGC AGCGGCGACC GCGACCCCTC CCGCGGCCCC GCCCGCCGCT ACCACGGCAA GCGCGAACCG GCACCTCGCG AGGACTAG
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Protein sequence | MPRDTDKNNA SARGRRDRPG GGKTSSGGKG GFGGKGGFGG KSAGGGKGRS GAARGPEKKF AKRGEGTFEA RADKPFAKKT FGGDAKRAFG GEGKRPYVKR DGAAPRRDFA DRPRRDDGDA PRPRFNRDER PARSGGDRPE RGPRKEFGEK RAFAPREGGE KRPYTPRPPR DDRGGDRPFK RDDRAPRRDR GDDARPAGRF GDKKFGDKKF GEKRPYTPRE GGDKRPYTPR EGGEKRPYTP REGGEKRPYA AREGGEKRPY TPRDGGEKRS YAPREGGDKR PYTPRGEGFR KDGERSRPTG DRPFGARPSR DGKFGGDKKF GRGAPDRGPR KDFGSRPDRG GDRGDAKPWQ KRDGDSAERG RSFDKPRFDK PREERGGDRP RFSRDDRPKF ERRERTGDWH EHPRNEGPSS DRPRSRDNGE RGFDRPRREN EDESKIFAKR PAFGGRGAYR ERPKTDRSKT ERRAAPAPAK ADKAGDRIAK VVARAGLCSR RDAEAWIVEG RVAVNGRVID SPALDVTYSD VITVDGKPLP ERERTRLFLY HKPRGLMTTH ADPEGRPTVF DNLPEDLPRL ISIGRLDFNT EGLLLLTNDG GLARALELPE TGWLRRYRVR AHGEVTQAQL DQLASGVEVD GVKYGPIEAK LERDQGANVW LVFAIREGKN REVRNVLAHL GLEVNRLIRV SYGPFQLLEI EEGQVEEVKT RVLREQLGEK IIKLAEADFG GPSPSETRPK PRPGKPVAAE DGPAPKKKAV VKRGAVEDRK GRKVKVERTG SGDRDPSRGP ARRYHGKREP APRED
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