| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1140 |
|---|
| Symbol | |
|---|
| ID | 4021616 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 1295379 |
|---|
| End bp | 1296365 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637961332 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_568279 |
|---|
| Protein GI | 91975620 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.129861 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGGCC AGGGCTTCTA CAAGACGCTG GCGTCGCCTT GGCTGTGGGG CGCGCTGCTG
CTCACCGCGG CGCTGCCGCT GACGCTGAAC AGCTACTATC TCCACATCCT CACCATCGCG
CTGGTCTATG TCGCGCTGGC CTCGGCGTGG AACATCGTCG GCGGCATGGC CGGACAGATC
TCGCTGGCGC ACAGCCTGTT CATCGGCACC GGCGCGATGC TCTCGACCGC GCTGCTGGTC
AAGCTCGGCA TCAATATGTG GGCGGGGCTG GTGATTTCCG CCGCGATCGC CGGGTTGCTC
GGCGCGATCA TCGCGTGGAT CGATTTCCGG TTTCAGCTCG GCCATCTGTC GTTCGTGCTG
ATCACGCTGG CCTTCGCCGA GATGGCCGCG ATCGTGGTCG AGGGCTGGGA ATTCCTCGGT
GGCGCGTCGG GCCTGCTGCT GCCGCGCGAC ACCGGTGACG TCTGGGCGTT CCAGTTCGGC
GGCGTCCGCG GCGCATTCTG GGTGATGCTC GGGCTCGCCG CGACGATTGC GCTGATCAAC
GTCGCCATTC TGAACTCGCC GCTCGGCTAT TATCTGCGCA CCATCCGGGA CAACGAGAAG
GCGGCGCAGG CGATCGGCGT CGACGTGCTG CGGCACAAGA TGATCGCGAT GACCATCTCG
GCGGTGCTGA CCTCGATCGT CGGCACCTGT TATGTCCGCT ATCTGACCTT CGCCGATCCC
TATCTGCTGG CGTCGCCGCT GATCACCATC GAGATCGTGC TGTTCGCCAC CGTCGGCGGG
CTCGGCCGCG CCTTCGGCCC GGCGCTCGGC GCATTGCTGC TGGTGCCGCT GGGCGAAGTG
CTGCGTGGCC AGCTCGGCGG CGCCGTGCCG GGGCTGCACT ACTTCATCTA TGGCGTCGTG
GTGATCGTCG TGATTCTCGT CACGCCGCGC GGGCTGTTGC CGCTGTTCGA GAAACTGGTG
CGGCGGCGCC GGCCGGCCGC GTCTTAA
|
|---|
| Protein sequence | MIGQGFYKTL ASPWLWGALL LTAALPLTLN SYYLHILTIA LVYVALASAW NIVGGMAGQI
SLAHSLFIGT GAMLSTALLV KLGINMWAGL VISAAIAGLL GAIIAWIDFR FQLGHLSFVL
ITLAFAEMAA IVVEGWEFLG GASGLLLPRD TGDVWAFQFG GVRGAFWVML GLAATIALIN
VAILNSPLGY YLRTIRDNEK AAQAIGVDVL RHKMIAMTIS AVLTSIVGTC YVRYLTFADP
YLLASPLITI EIVLFATVGG LGRAFGPALG ALLLVPLGEV LRGQLGGAVP GLHYFIYGVV
VIVVILVTPR GLLPLFEKLV RRRRPAAS
|
|---|
| |