| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1115 |
|---|
| Symbol | |
|---|
| ID | 4021591 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 1268995 |
|---|
| End bp | 1269975 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637961307 |
|---|
| Product | UDP-glucose 4-epimerase |
|---|
| Protein accession | YP_568254 |
|---|
| Protein GI | 91975595 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1087] UDP-glucose 4-epimerase |
|---|
| TIGRFAM ID | [TIGR01179] UDP-glucose-4-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.423931 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAACT ACATCCTCGT CACCGGCGGC GCCGGCTATA TCGGCAGCCA CATGACGCTG
GCGCTGCAGG CCGCAGGCGA GCGTCCGCTG GTGATCGATG ATCTTTCCGC CGGGCTGCGC
AGCGCCGTTC CGGACGGCGT CCCGTTGTTC GCCGGCTCGG TCGGCGACGC CGCCTTGGTC
GGCGACATCA TGGATCGCTA TCCGATCGCG GCGATCATCC ATTTTGCGGC CAGCGTCGTG
GTGCCGGAAT CGGTCGCGCG CCCGCTCGAT TACTATCGCA ACAACACCGC CAACGCCCGG
ACGCTGATCG ACTGCGCGGT TCAGCGAAAG GTGCCGCATA TCGTGTTCTC GTCGACCGCC
GCGGTCTATG GCGAACCCGA TCGCACCCCG ATCAGCGAAG GCCAGTCGAC GCAACCGATC
AACCCCTACG GCCGCTCCAA GCTGATGGTC GAATGGATGC TCGACGACGT CGCGCGCGCG
CATCCGCTGA GCTATGCGGC GCTCCGCTAC TTCAACGTCG CGGGCGCCGA TCCGGATGGC
CGCGCCGGCC AGTCGTCGCC GAACGCCACT CATCTGATCA AGATCGCCGT CCAGGCCGCC
CTCGGCAAGC GCGACGGCCT CGATGTGTAC GGCACCGACT ATCCGACCGC CGACGGCTCC
TGCGTCCGCG ACTACGTCCA TGTCAGCGAT CTCGTCGCCG CCCATATCGA CGCGCTGCGA
TATCTGCGCG CCGGCAATCC GAGCGTCATC TGCAACATCG GCTATGCCAA CGGCTATTCG
GTGCTGGACG TGATCGAGGT GGTGAAGCGC GTCTCGGGTG TCGATTTCGA CGTCCGCATC
AAGGGCCGCC GCCCCGGCGA TCCGGCCGCG CTGGTGGCCT CGAACGAACT GGCGAAATCG
CTGCTCGGGT GGCGCCCCCG TCACGACGAT CTCGAAACCA TCGTGCGGCA CGCACTGGCC
TGGGAACGCC GGCTGCCCTG A
|
|---|
| Protein sequence | MDNYILVTGG AGYIGSHMTL ALQAAGERPL VIDDLSAGLR SAVPDGVPLF AGSVGDAALV
GDIMDRYPIA AIIHFAASVV VPESVARPLD YYRNNTANAR TLIDCAVQRK VPHIVFSSTA
AVYGEPDRTP ISEGQSTQPI NPYGRSKLMV EWMLDDVARA HPLSYAALRY FNVAGADPDG
RAGQSSPNAT HLIKIAVQAA LGKRDGLDVY GTDYPTADGS CVRDYVHVSD LVAAHIDALR
YLRAGNPSVI CNIGYANGYS VLDVIEVVKR VSGVDFDVRI KGRRPGDPAA LVASNELAKS
LLGWRPRHDD LETIVRHALA WERRLP
|
|---|
| |