| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1061 |
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| Symbol | |
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| ID | 4021537 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 1215686 |
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| End bp | 1217434 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637961253 |
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| Product | transcriptional regulator NifA |
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| Protein accession | YP_568200 |
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| Protein GI | 91975541 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.798583 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCAGC GCGAAGTACG TCTTGTCGAG AGCGAGCAAT CGCGGCAGCC GATGAACCAG
AACCCGATAC CACTGAGTGA GATTGCGCTC ACCGGCATCT TCGAAATCTC GAAGATCCTC
ACCGCGCCGG CGCGCCTCGA AGTCACGCTC GCCAATGTGG TCAATTTGCT GCAGTCCTTT
CTGCAGATGC GCAACGGTGT CGTTTCACTA CTGGCTGACG ACAGCGTTCC GGACATCACG
GTCGGGGGCG GCTGGAACGA GGGCAGCGAC AACCGCTATC GCGCAAGGCT GCCGCAAAAA
GCGATCGACC AGATCGTCGC GACCTCGGTT CCGCTTGTCG CCGACAATGT GTCCACACAT
CCGATGTTCT CTGCAGCGGA CGCTCTTGCG CTCGGCGCGA CCGACGAGAC CCGCGTGTCG
TTCATCGGCG TGCCGATCCG GATCGACTCG CGCGTGGTCG GGACGCTGAC GATCGACCGG
GTTCGCGACG GGCAGTCGAA CTTCAGGATG GACGCCGATG TGCGTTTCCT GACCATGGTT
GCCAATCTGA TTGGCCAAAC CGTGAAACTG CACCGCGTAG TGGCGCGGGA TCGCGAACGG
CTGATGGCGG AAAGTCATCG CCTGCAGAAA GAATTGTCCG AGTTGAAGCC TCAGCGCGAG
CGCAAGCGCG TTCGCGTCGA TGGCATCGTC GGCGAGAGTC CGGCGATTCG TACGTTGCTT
GCCAAAGTCA GCATCATCGC CAAATCGCAA TCGCCGGTGC TGCTGCGCGG CGAGTCGGGC
ACCGGCAAGG AACTGATCGC AAAGGCGATC CATGAATTGT CAGCGCGTAG CAACGGGCCG
TTCATCAAGA TCAACTGCGC GGCGCTTCCC GAATCGGTGC TCGAATCGGA ATTGTTCGGG
CACGAGAAGG GCGCGTTCAC CGGTGCGATC GCCTCGCGCA AGGGCCGGTT CGAACTCGCC
GACAAGGGCA CGCTGTTCCT CGACGAGATC GGCGAGATCT CCCCCGCATT TCAGGCCAAG
CTGCTGCGCG TTCTGCAGGA GCAGGAGTTC GAGCGGGTCG GCGGCAACCA GACCATCAAG
GTCAACGTCC GCATCGTTGC TGCGACCAAC CGCAACCTCG AGGAAGCGGT GGCGCGCAAG
GAGTTTCGCG CCGATTTGTA TTATCGCATC AACGTCGTGC CGATGATCCT GCCGCCACTG
CGCGACAGGC CGAGCGACAT TCCGTTGCTG GCGACCGAGT TTCTGAAGAA CTTCAACAAG
GAGAACGATC GCGAGCTGGC GTTCGAGCCG CACGCGCTGG AATTGTTGAA GGCCTGCTCG
TTCCCCGGAA ACGTCCGCGA ACTCGAGAAC TGCGTGCGGC GAACGGCGAC GCTGGCGGCG
GGACCGGCCA TCCACGACAG TGATTTCGCC TGTCACCAGG ACGAGTGCCT GTCCGCGATC
CTTTGGAAAG GCCACGCCGA GCCGCCGCCG GAGCGGCCGC GGCCACAAAT CCCGCTGCAG
GTGTTGCCGC GCAAGGTCCC GGTTGAGGTC GTCACGCCGC GCGAGGCATT CACTGCGCCT
ACGGAGCCGG ACCAAACCGC GGTGCGGGCC GCGTCGAACG ACGCAGCGAT GCCGGAGCGT
GAGCGCCTGA TCAATGCGAT GGAACGATCC GGCTGGGTGC AGGCGAAGGC CGCACGCCTC
CTCGGACTGA CGCCGCGTCA GATCGGTTAC GCGCTCAAGA AGCACGATAT CGAACTCAAG
CATTTCTAG
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| Protein sequence | MAQREVRLVE SEQSRQPMNQ NPIPLSEIAL TGIFEISKIL TAPARLEVTL ANVVNLLQSF
LQMRNGVVSL LADDSVPDIT VGGGWNEGSD NRYRARLPQK AIDQIVATSV PLVADNVSTH
PMFSAADALA LGATDETRVS FIGVPIRIDS RVVGTLTIDR VRDGQSNFRM DADVRFLTMV
ANLIGQTVKL HRVVARDRER LMAESHRLQK ELSELKPQRE RKRVRVDGIV GESPAIRTLL
AKVSIIAKSQ SPVLLRGESG TGKELIAKAI HELSARSNGP FIKINCAALP ESVLESELFG
HEKGAFTGAI ASRKGRFELA DKGTLFLDEI GEISPAFQAK LLRVLQEQEF ERVGGNQTIK
VNVRIVAATN RNLEEAVARK EFRADLYYRI NVVPMILPPL RDRPSDIPLL ATEFLKNFNK
ENDRELAFEP HALELLKACS FPGNVRELEN CVRRTATLAA GPAIHDSDFA CHQDECLSAI
LWKGHAEPPP ERPRPQIPLQ VLPRKVPVEV VTPREAFTAP TEPDQTAVRA ASNDAAMPER
ERLINAMERS GWVQAKAARL LGLTPRQIGY ALKKHDIELK HF
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