| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1033 |
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| Symbol | |
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| ID | 4021509 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 1183478 |
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| End bp | 1185130 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637961225 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_568172 |
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| Protein GI | 91975513 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I
[COG1177] ABC-type spermidine/putrescine transport system, permease component II |
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| TIGRFAM ID | [TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.957073 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCCCG CGCGCAATCC CAACGGCCTG TCGGTTCTTG TCGGCATCCA GCTGATGCTG
CCGACGGCGG CATTCCTTGC GTTGTTCTTC GTCTGGCCGA CGATTCTGAT CGTCTCGCAG
AGCTTGCTCG GCGAGGGCGG ATGGTTGTCG CAATACACCA TGTTCCTGTC GAGCGCGGGC
TATGTGCGCA TCCTGCTGCG CACGCTGGTC ATGGCCGGCC TCGTCAGCAC GCTGTGCCTG
ATCATCGCCT ATCCCTACGC CTATCTGATG AGCCAGGTGC GCGGCAACAT GCTCACGGTG
CTGATGGGCG TCGTGCTGAT CTCGTTCTTC ACCAGCGTGA TGGTGCGATC CTTCGCGTGG
ATCGTGGTGA TGCAGCGCAA CGGCATCGTC GACCGTCTGG CGCAGTCTCT CGGCTTCGAC
TCGCTGGTGC TGCGCGGCTC CACCCTCGGC GTCACCATCG CGATGGTGCA GATCATGCTG
CCGTTCATGA TCTTTCCGCT CTACAGCACG ATGGTCGGCA TCGATCGTCG TCTCAATGTC
GCCAGCAAGT CGCTCGGCGC GAATGGCTGG ACCACGTTCT GGCGGGTGTA CTGGCCGCTG
TCGCTGCCCG GCGTGGTCAG TGGCTGGGTC ATCGTCTTCA TCACTTCGCT GGGCTTCTAC
GTGATCCCCG GCCTGGTCGG TTCGCCGCAG GAGCAGCTGC TCTCGCAATT GATCTACACG
CTGATCAACA CCGTGTTGAA CCTGCCGCTC GCTTCGGCCG CGTCGATGCT GCTGTTGCTG
ATGGCGCTGG CGGTGGTGCT GCCGGCGATG TCGCGGTTCG ACGTCGCGGC CGGCGTGACG
GCGCGGGCCG GACAGGTCAA CGACACGACT GATCGTCGCT CCGCGTGGCT TTACGTCTGG
GCGATCGTGG TCGGCGTTGC GCTGCTGCTG CCGAGCCTGG TCGTCATTCC CCTGAGCTTT
CCGGGCAATG CCAGCTTCGC CTTTCCGCCG ACCTCCTGGT CCACGCGATG GTACGAGCGG
TTCTTCAGCA GCGACGAATG GTTCGGCGCG CTGCTGGCCT CCTTGCAGGT CGCCGTCATC
ACGATGGTGC TCGCCGTGGT GCTGTCCGTC AGCGCAGCGC TGGCGATCCG CCGGCTGCCG
CCCTCGTTCC GCATCGTGCT GCGTTCCTTC GTGATGGCGC CACGCATCGT GCCCGGCATC
ATCATCGCGA TCGCGATCTA TGGTCTGTTT CTTTCATGGG GTCTGACCGC GACCACCGCC
GGCTTCGTGA TCGCCCACAC CGTTCTGGCG CTGCCGTTCT CCTTCATTCC GACCATGACG
GCGCTCGAAC AATTCGATAC CCGGCTCGAG CAGGCTTCGG CGAGCCTCGG CGCCGGACGG
ACCAAGACCT TGTTCCGGGT GATGTTGCCG TTGATTTCGC CGGGACTTTT GACGGGCGGC
TTGTTCGCCT TCGTCATCTC GTTCGACGAG GTCGTCGTCT CCCTCTTCAT CAGCGGAACC
GAACTGCGGA CGCTTCCCGT CCAGATGTAT CGGTCCGTCG CCACCGATAT CGATCCGACC
ATCGCGGCGG CATCGACCAT GCTTCTGCTC CTCACAATGG TGCTGGTGAT CGGAAGCTCC
ATGCTCTCAA AGAAGTTTCA GCGTGCTCCA TGA
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| Protein sequence | MNPARNPNGL SVLVGIQLML PTAAFLALFF VWPTILIVSQ SLLGEGGWLS QYTMFLSSAG
YVRILLRTLV MAGLVSTLCL IIAYPYAYLM SQVRGNMLTV LMGVVLISFF TSVMVRSFAW
IVVMQRNGIV DRLAQSLGFD SLVLRGSTLG VTIAMVQIML PFMIFPLYST MVGIDRRLNV
ASKSLGANGW TTFWRVYWPL SLPGVVSGWV IVFITSLGFY VIPGLVGSPQ EQLLSQLIYT
LINTVLNLPL ASAASMLLLL MALAVVLPAM SRFDVAAGVT ARAGQVNDTT DRRSAWLYVW
AIVVGVALLL PSLVVIPLSF PGNASFAFPP TSWSTRWYER FFSSDEWFGA LLASLQVAVI
TMVLAVVLSV SAALAIRRLP PSFRIVLRSF VMAPRIVPGI IIAIAIYGLF LSWGLTATTA
GFVIAHTVLA LPFSFIPTMT ALEQFDTRLE QASASLGAGR TKTLFRVMLP LISPGLLTGG
LFAFVISFDE VVVSLFISGT ELRTLPVQMY RSVATDIDPT IAAASTMLLL LTMVLVIGSS
MLSKKFQRAP
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