Gene RPD_0945 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0945 
Symbol 
ID4021420 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1061855 
End bp1062580 
Gene Length726 bp 
Protein Length241 aa 
Translation table11 
GC content68% 
IMG OID637961136 
Producthypothetical protein 
Protein accessionYP_568084 
Protein GI91975425 
COG category[S] Function unknown 
COG ID[COG1434] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.238786 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGCTGC CGACTGATCA GCAACCGACA CGAACCGCGC CCGGCAAGCC TGCGCGGCGG 
CCGGGACGGT TACGCGCGGT GATCGTCGCG ACGTTGGCCC TCGGCTTCGT CGCCACGGCC
GCGGGATTTG TCGCGTTCCT GGCGCAGTTG CGCGGCGCCG AGCTGAAGCC GAACCGTACG
GCCGATGGCA TCGTCGTGCT GACCGGCGGC TCGTCGCGGG TGTCGGATGC GGTCGAGCTG
CTCGCCTCCG GCTATGGCAA GCGACTGTTA ATCTCCGGCG TGCATCGGAC CAATGGCGCC
AGCGACATCT CGCGCTCGGT GCCGGACAGC AAGGACTGGC TGGATTGCTG CGTCGATCTC
GATCGATCGG CGGTCAACAC CCGCAGCAAC GCCGCCGAAA CCCGGCGCTG GGCGCACGAG
CGTGGCTTTC ATTCGCTGAT CGTCGTCACC TCGAATTACC ACATGCCGCG CGCGATCGTC
GAAATGTCGC ACGCGATGCC CGACGTCGAG CTGATCCCAT TCGCGGTGAT CGGGGACAAG
TGGCGCGACG AACCGTGGTG GACCAGTGGC GCGACGCTGC GGCTGCTGCT ATCGGAATAC
GCGAAATACG TCGCCGTCGA AGCGAGGGTG CGGCTGGCGC GACTGGGCAT CGAACTGGCG
CCCGAGGCCT CGGAGCTGGC GCCCGAGCCG GCGGCCCGCA AGCCGACGAC GGCGCTCGCG
AACTGA
 
Protein sequence
MELPTDQQPT RTAPGKPARR PGRLRAVIVA TLALGFVATA AGFVAFLAQL RGAELKPNRT 
ADGIVVLTGG SSRVSDAVEL LASGYGKRLL ISGVHRTNGA SDISRSVPDS KDWLDCCVDL
DRSAVNTRSN AAETRRWAHE RGFHSLIVVT SNYHMPRAIV EMSHAMPDVE LIPFAVIGDK
WRDEPWWTSG ATLRLLLSEY AKYVAVEARV RLARLGIELA PEASELAPEP AARKPTTALA
N