| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0836 |
|---|
| Symbol | |
|---|
| ID | 4021310 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 937871 |
|---|
| End bp | 938545 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637961026 |
|---|
| Product | LuxR family two component transcriptional regulator |
|---|
| Protein accession | YP_567975 |
|---|
| Protein GI | 91975316 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0588074 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGC CCGTCAGCAC GCATCTGATC ATTGCCGACG ACCACCCGTT GTTCCGCGAC
GCCTTGCGGT TGGCGGTCTC GAGTGTCGTT CCCGGCGCCA AGGTCGGTGA AGCCGGCTCG
TTCGAGGACC TCACCGCGAT GCTCGAGCGG GACGGCGATG TCGACCTCGT CCTGCTCGAT
CTGAAAATGC CGGGGATCAG CGGGTTTTCC GGGCTGATCT ACCTGCGAGC TCAATACCCG
GCGATCCCGG TGGTTGTGGT CTCGGCCAGC GACGACGTCG AGACGATCCG CCGTTCGCTG
GATTTCGGAG CCTCCGGTTT CGTGCCGAAG CGCTTCGGAG TCGAGAAGCT GGGCGAGGCG
ATCCTGCAGG TTCTGGACGG CGACGTCTGG GTTCCGCCGG ATGTCGACCT GTCGGCGGCC
GCCGATCCCG AGACCAGCAA GCTGCGCGAC CGGCTGGTGA CGCTGACGCC GCAGCAGGTG
CGGGTGCTGA TGATGCTGTC CGAAGGGCTG CTCAACAAGC AGATCGCCTA TGAGCTCGGC
GTCTCGGAAG CCACCATCAA GGCGCATGTC TCGGCGATCC TGCAGAAGCT CGGCGTCGAG
AGCCGGACCC AGGCGGTGAT CGCCGCGGCG AAAATTTCCG GCAACCAGTG GCGCCAGGAC
GAGCCGGTGG CATAA
|
|---|
| Protein sequence | MSTPVSTHLI IADDHPLFRD ALRLAVSSVV PGAKVGEAGS FEDLTAMLER DGDVDLVLLD
LKMPGISGFS GLIYLRAQYP AIPVVVVSAS DDVETIRRSL DFGASGFVPK RFGVEKLGEA
ILQVLDGDVW VPPDVDLSAA ADPETSKLRD RLVTLTPQQV RVLMMLSEGL LNKQIAYELG
VSEATIKAHV SAILQKLGVE SRTQAVIAAA KISGNQWRQD EPVA
|
|---|
| |