| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0816 |
|---|
| Symbol | |
|---|
| ID | 4021290 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 921365 |
|---|
| End bp | 922306 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637961006 |
|---|
| Product | protoheme IX farnesyltransferase |
|---|
| Protein accession | YP_567955 |
|---|
| Protein GI | 91975296 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) |
|---|
| TIGRFAM ID | [TIGR01473] protoheme IX farnesyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.566736 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTCGGTCA TCGACACCAA CCAGATCGAT CTCGCCGCGC CCCGCATCTC CGAGGCCGGA
GTCGCCGACT ACGTTGCGCT GTTGAAGCCG CGGGTGATGT CGCTGGTGGT GTTCACTGCG
CTGGTCGGTA TGCTGCTGGC CCCGGGCGAT TTCCATCCGG TGCTGGCAGT CACCGCGATG
CTGTGCATCG CCGTCGGCGG CGGCGCCGCC GGCGCGCTGA ACATGTGGTA CGAAAACGAT
ATCGACGCGC TGATGACGCG CACCGCGAAC CGGCCGATCC CGCGCGGCCG CGTTACCCGG
CCCGAAGCGC TGACCTTCGG CATGACGCTG TCGTTCTTCT CGGTGGTCAC GCTCGGCGTA
CTGGTCAACT GGATCGCCGC GGCGCTGCTC GCCTTCACCA TCTTCTTCTA CGTCGTGATC
TATACGATGT GGCTGAAGCG ATCGACCGCG CAGAACATCG TGATCGGCGG CGCCGCCGGC
GCGCTGCCGC CGGTGGTGGC CTGGGCCGCG GTCACCGGCT CGCTCGCGGT CGAGCCGCTG
CTGTTGTTCG CGATCATCTT TTTCTGGACG CCGCCGCACT TCTGGGCGCT GGCGCTGTTC
CGTAACGACG ACTACGCCCG CGCCGGCGTG CCGATGCTGC CGGTGGTCGC AGGTCCCGAT
CATACAAGGC TGCAGATCCT GCTCTACACC ATCGTGCTGG TCGCGGTCGC CGCAGCGCCG
TGGCCGCTCG GCTATTTCGA CGCGGTGTAC GGCATTGCCT CGCTGGCGCT CGGCGGCTGG
ATGCTGGTGC TCGCCATTCG GGTGTATCGC CATCGCAGCG GCAGCGCCGC GCTGCGGGCG
ACGCGCAATC TGTTCAAGTT CTCGATCCTG TATCTGTTCG CGCTGTTCTC GATCCTGTTG
ATCGAGGTCG TCGCGAAGGC CGTGTGGCAG TTGTTCGCCT GA
|
|---|
| Protein sequence | MSVIDTNQID LAAPRISEAG VADYVALLKP RVMSLVVFTA LVGMLLAPGD FHPVLAVTAM
LCIAVGGGAA GALNMWYEND IDALMTRTAN RPIPRGRVTR PEALTFGMTL SFFSVVTLGV
LVNWIAAALL AFTIFFYVVI YTMWLKRSTA QNIVIGGAAG ALPPVVAWAA VTGSLAVEPL
LLFAIIFFWT PPHFWALALF RNDDYARAGV PMLPVVAGPD HTRLQILLYT IVLVAVAAAP
WPLGYFDAVY GIASLALGGW MLVLAIRVYR HRSGSAALRA TRNLFKFSIL YLFALFSILL
IEVVAKAVWQ LFA
|
|---|
| |