Gene RPD_0815 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0815 
Symbol 
ID4021289 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp919666 
End bp921291 
Gene Length1626 bp 
Protein Length541 aa 
Translation table11 
GC content63% 
IMG OID637961005 
Productcytochrome-c oxidase 
Protein accessionYP_567954 
Protein GI91975295 
COG category[C] Energy production and conversion 
COG ID[COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 
TIGRFAM ID[TIGR02891] cytochrome c oxidase, subunit I 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0856305 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGATGG AAGCTGCAAG GGTTGCTCAT TCCGATCACG CGCATGACGA TCACGCCCAT 
GCGCATCCGA CAGGGTGGCG GCGCTACGTC TACTCGACCA ATCACAAGGA CATCGGCACC
ATGTATCTGA TCTTCGCGAT TATCGCGGGG ATCATCGGCG GCGCGATGTC GATCGCGATC
CGGATCGAGC TGATGTACCC GGGCGTGCAG ATCTTCCACG AAAGCCACAC CTACAACGTG
TTCGTCACCT CGCACGGCCT GATCATGATC TTCTTCATGG TGATGCCGGC GATGATCGGC
GGCTTCGGCA ACTGGTTCGT GCCGCTGATG ATCGGCGCGC CCGACATGGC GTTCCCGCGC
ATGAACAACG TGTCGTTCTG GTTGCTGCCG GCCGCGTTCG CGCTGCTGCT GATCTCGACC
TTCGTGGAGG GCGAGCCTTC GTCGAACGGC GTCGGAGCGG GCTGGACGAT GTACGCCCCG
CTATCGACCT CGGGGCATCC CGGCCCCGCG GTCGACTTCG CCATCCTGGC CCTGCACATC
GCCGGCGCCT CGTCGATCCT CGGCGCCATC AATTTCATCA CCACGATCTT CAACATGCGC
GCGCCGGGCA TGACCCTGCA CAAGATGCCG CTGTTCGTGT GGTCGATCCT GGTCACCGTG
TTCCTGCTGC TGCTGTCGCT GCCGGTGCTC GCCGGCGCGA TCACCATGCT GCTGACCGAT
CGCAATTTCG GCACGACCTT CTTCTCGGCC GAAGGCGGCG GCGATCCGTT GCTGTTCCAG
CATCTGTTCT GGTTCTTCGG CCATCCGGAA GTCTACATCC TGATCCTGCC GGCGTTCGGC
ATGGTCAGCC AGATCGTCTC GACCTTCTCC AAGAAGCCGG TGTTCGGCTA TCTCGGCATG
GCCTACGCGA TGGTGGCGAT CGGCGTGATC GGCTTCGTGG TCTGGGCGCA CCACATGTAC
ACGGTCGGGA TGTCGAGCAC GACGCAGGCC TATTTCGTCG CCGCCACGAT GGTGATCGCG
GTGCCGACCG GCGTGAAGAT CTTCTCCTGG ATCGCCACGA TGTGGGGCGG CTCGATCGAG
TTCAAGACGC CGATGCTGTG GGCGGTCGGC TTCATTTTCC TGTTCACCGT CGGCGGCGTC
ACCGGCGTGG TGCTGGCCAA TGCCGGCGTC GACCGCGTGC TGCAGGACAC CTATTACGTC
GTCGCGCACT TCCACTACGT GCTGTCGCTC GGCGCCGTGT TCGGGATCTT CGCCGGCTGG
TACTACTGGT TCCCGAAGAT GTTCGGCTAC ATGTACAGCG AGACGATCGG CAAGCTGCAC
TTCTGGGTGA CGTTCATCGG CGTCAACATG GTGTTCTTCC CGCAGCACTT CCTCGGACTG
TCGGGGATGC CGCGCCGCTA CGTCGACTAT CCGGACGCGT TCGCCGGCTG GAACCTGGTG
TCGTCGATCG GCTCCTACAT CTCCGGCTTC GCCGTGCTGA TCTTCCTGTT CGGGATGACG
CTCGCCTTCA TCCGCAAGGA GAAGGCGGCG GACAATCCGT GGGGCGTCGG CGCTACCACG
CTGGAATGGA CCCTTTCGTC GCCGCCTCCG TTCCATCAGT TCGAAGTGCT GCCGCAGGTG
CGCTGA
 
Protein sequence
MTMEAARVAH SDHAHDDHAH AHPTGWRRYV YSTNHKDIGT MYLIFAIIAG IIGGAMSIAI 
RIELMYPGVQ IFHESHTYNV FVTSHGLIMI FFMVMPAMIG GFGNWFVPLM IGAPDMAFPR
MNNVSFWLLP AAFALLLIST FVEGEPSSNG VGAGWTMYAP LSTSGHPGPA VDFAILALHI
AGASSILGAI NFITTIFNMR APGMTLHKMP LFVWSILVTV FLLLLSLPVL AGAITMLLTD
RNFGTTFFSA EGGGDPLLFQ HLFWFFGHPE VYILILPAFG MVSQIVSTFS KKPVFGYLGM
AYAMVAIGVI GFVVWAHHMY TVGMSSTTQA YFVAATMVIA VPTGVKIFSW IATMWGGSIE
FKTPMLWAVG FIFLFTVGGV TGVVLANAGV DRVLQDTYYV VAHFHYVLSL GAVFGIFAGW
YYWFPKMFGY MYSETIGKLH FWVTFIGVNM VFFPQHFLGL SGMPRRYVDY PDAFAGWNLV
SSIGSYISGF AVLIFLFGMT LAFIRKEKAA DNPWGVGATT LEWTLSSPPP FHQFEVLPQV
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