| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0764 |
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| Symbol | |
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| ID | 4021238 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 856152 |
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| End bp | 858869 |
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| Gene Length | 2718 bp |
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| Protein Length | 905 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637960954 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_567903 |
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| Protein GI | 91975244 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGATAG GCCTGCATAT TGGTACCGGG GACGCCGACG ATTCGCTCGG AACCCAAAAG
CGCTTGACTA TCGGTAACAT GCTACACCAC CGCCCGGTGG TGTTGCTGAT GGGATGCGGG
TTGCTGCTGA TTACGGCAAT CGCGGTGGTG ACCGCCGTGA TGGTCGGCGA TTTCCGCAGC
AAGGCACTCA AGAACAGCGA GCGGGAACTG GCCAATACGG CAGTCTTGCT CGCACACCAT
TATGATCGGG AACTCGAGGA TTTCCTCGCG ATCCAGGCCG ACATCGTGAC GATGGTCCGG
CAGGCCCAAT TCGTCTCCGC CGACACCTTC AGCGGCCAGA TGGCGACGCT CGAAACCCAC
GAATTGCTCC GCTCCAAAGC GCAGACCGGG CCGGAGTCTT CGAAGCTCGC GATCTTCAGC
GATCGGGGAA TGCTGATCAA CAGCTCGGGG GCCTGGCCGG TTTCCGAACT CTCGATCGCC
GACCGCGCCT ACTTTCGGGC TCACAAAGCC GGCACTGCGC CACGGACAAC CGTCGAACTG
GTCCGGAATA CGCTCGACGG CGGCTGGCTG ATCGTGATGG CGCAGCGTCT CACCAATGCG
AATGGCGACT TTCTCGGTAT CGTCAGCAGA TCGCTGACGC CAGCGCATAT CGAGCAATTC
CTGGCGTCGG TGTCGCTCGG CGGAGATTCC GCGATCTCGA TCCATCATCG CGACGGCTTT
CTGATGGCAC GCCATCCCCA CGCCGAAGAG ATCATCGGCC GCAATCTTCG GTCCGGGCTG
GCCGAAGAGC TGAAGATGTT CGATGCCAAC GTCAATGTAC AACTCACGAG CCCAGTCGAC
GGACGCGACC GGCTGGTGTC GACCTACGCC CTCAAAAATC TGCCCATTGT GGTTTTTTCC
GCCACCACGA CGGACGAAGC TCTGGCCGCA TGGCGCAAGC AGACCCGGCT GCTGATCTCC
GCCGCGACGA TTTCGGCGCT TGTCGTATCT GTCATCCTTT TGCTGATCAT TCGAGAAATC
GGCAAACAGC ACCACGCAAC GGAGGCACGG CTGGCACTGG ACAAGCAGCG GCTGAACACT
GCGATCAACA ACATGTCGCA GGGACTGCTG TTGTTCGACG CCCACGCACG CCTGGTCGTA
TGCAATCAGC GCTATATCCA GATGTACGGG TTGTCTCCGG AGGTCGTGAA GCCGGGCTGC
AGCTATCGTG ACATCATCGC TCACCGGCAG GCGCTGGGAT CGTTCAAGGG CAATGTCGAT
GAGTATTGCA GCCGCAGCAT CCAGTCCGTC ATCGTGGAAA AGACCACGGC AATCCACGGT
TTGAACGAAC GTTCGGTCCA AATTTCCAGC CTGCCGGTTC CAGGCGGCGG CTGGGTCTCG
ACCCACGAGG ACATCACCGA GCGGCTTCGC GATGGCGAGA AGATCGCGTA TCTCGCACAC
TACGACAGCT TGACCGATCT GCCCAACCGC AGCCTGTTCC GGCAGCGGCT GGAGCGAAAG
CTGGAGGGCG CCCAGCGCGG CGCCTCTTTC GCTCTGCTCT ATATCGACAT CGATGAGTTC
AAGAGCATCA ATGACACGCT CGGCCATCCG GTCGGCGACG AATTGTTGAA GCAGGTGGCG
GTGCGGCTGC AAGCCTGTGT CGGCGAGGAC GAATTTGTTG CCCGACTGGG CGGCGACGAA
TTCGCCATCG TCACCAACGG GGCCGGCGAC AGCGACCAGG CGACCGAGAT GGCCGAACGC
ATCCTCCAGG CGATCCGCAC GCCCTATCAA TGCCTCGGCC ATCGTCTGTC GACTGACGCT
TCGATCGGTA TCGCGATTGC GCCCAGGGAT GGGGACGACA TCGACCAACT CGTCAAGAAC
GCCGACCTCG CAATGTACGG CGCCAAGGCC CACGGCCGGC GCACCTTCCG TTTCTTCCAG
CCAGAGATGG ATGCGGTCGC GCGCGCGCGC CGTCAGCTCG AATTCGACCT GCGCAGCGCG
ATCGCCGATG ACGCTTTCGA GATCCACTAC CAGCCGGTCG TCGACCTGCG CAGCAACAAG
ATCACCGGTT GCGAAGCCTT GCTGCGCTGG CGACATCCGA CCCGCGGCAT GATCTCGCCG
GGTGAATTCA TCCCGATCGC CGAGGACACC GGCCTGATCA ACGAGATCGG CGGCTGGACA
TTGGCGGCCG CCTGCGCCGA GGCGGTGCAA TGGACCGATG ACATCACCCT CGCGGTGAAC
ATCTCGCCGG TGCAGTTCCG GCAGCCGACC CTCGCGCTTC TGGTCGCCTC GGTGCTGGGA
TCGACCGGAC TACCGGCGCG ACGACTCGAG CTCGAAGTCA CCGAAGCGGT GCTGATCCAC
GACGACGACG CTGCACTGAC GACGCTGAAC CAGCTTCGTG CGCTCGGGGT GCGGATCTCG
CTCGATGATT TCGGCACGGG CTATTCGTCG CTGAGCTATC TGCAGCGCTT CCCGTTCGAC
AAGATCAAGA TCGACCGCGC CTTCGTCGAC AGCATCGACA ATGCGGACGG CTCGACTGCG
ATCATCGAGG CCGTGGTCAA TATCGCGGCG TCGCGCCACA TGACGACCAC GGCGGAAGGC
GTCGAAACCG TCCGGCAACG CGACATCCTG CGCGCGCTCG GCTGCACCCA GATGCAGGGC
TACCTGTTCA GCCCGGCAAC GCCCGCGCCG AAATTCCGCG CGTTGCTGAC CAAGCACCGC
AATACGGAAG CCGCTTGA
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| Protein sequence | MRIGLHIGTG DADDSLGTQK RLTIGNMLHH RPVVLLMGCG LLLITAIAVV TAVMVGDFRS
KALKNSEREL ANTAVLLAHH YDRELEDFLA IQADIVTMVR QAQFVSADTF SGQMATLETH
ELLRSKAQTG PESSKLAIFS DRGMLINSSG AWPVSELSIA DRAYFRAHKA GTAPRTTVEL
VRNTLDGGWL IVMAQRLTNA NGDFLGIVSR SLTPAHIEQF LASVSLGGDS AISIHHRDGF
LMARHPHAEE IIGRNLRSGL AEELKMFDAN VNVQLTSPVD GRDRLVSTYA LKNLPIVVFS
ATTTDEALAA WRKQTRLLIS AATISALVVS VILLLIIREI GKQHHATEAR LALDKQRLNT
AINNMSQGLL LFDAHARLVV CNQRYIQMYG LSPEVVKPGC SYRDIIAHRQ ALGSFKGNVD
EYCSRSIQSV IVEKTTAIHG LNERSVQISS LPVPGGGWVS THEDITERLR DGEKIAYLAH
YDSLTDLPNR SLFRQRLERK LEGAQRGASF ALLYIDIDEF KSINDTLGHP VGDELLKQVA
VRLQACVGED EFVARLGGDE FAIVTNGAGD SDQATEMAER ILQAIRTPYQ CLGHRLSTDA
SIGIAIAPRD GDDIDQLVKN ADLAMYGAKA HGRRTFRFFQ PEMDAVARAR RQLEFDLRSA
IADDAFEIHY QPVVDLRSNK ITGCEALLRW RHPTRGMISP GEFIPIAEDT GLINEIGGWT
LAAACAEAVQ WTDDITLAVN ISPVQFRQPT LALLVASVLG STGLPARRLE LEVTEAVLIH
DDDAALTTLN QLRALGVRIS LDDFGTGYSS LSYLQRFPFD KIKIDRAFVD SIDNADGSTA
IIEAVVNIAA SRHMTTTAEG VETVRQRDIL RALGCTQMQG YLFSPATPAP KFRALLTKHR
NTEAA
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