Gene RPD_0718 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0718 
Symbol 
ID4021191 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp806405 
End bp808291 
Gene Length1887 bp 
Protein Length628 aa 
Translation table11 
GC content67% 
IMG OID637960907 
Productheparinase II/III-like 
Protein accessionYP_567857 
Protein GI91975198 
COG category[S] Function unknown 
COG ID[COG5360] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.79901 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGCAG AGCTGGTTCA GACCAAGCTG CGTTGGACCG CAAAGGTCGC CGACGTCTTG 
CCGAATCTGA AATCTGCCGT CCGCAAGGCG CAGAAAGTCG ATGCGTTCCA TGAACCCGGG
GCATTAGCGC GCGTGTCATC CGCTCAACGC AAACGGATCT CGAGCCTGAT CGTGGGCCGC
TTCGCGCGGA ACATGGCGGC GCGTGTATCC GGCGGTTCGG CGGCGCTGAC CCGGCTATGG
CCCGGCCGCA CCGACCGGCT GATCATCGCC CCGCACGATC TGCGGACCGC CGACGCGACC
CGCGCTGCGG AAATCTACGC CGGACGTTTC GTGTTCGCCG GCAAGATCGT GACCTGCCAC
GGCCGCTCGA TCTTCGATCT CGAACCGCCG TCGGACGATT GGGAAGCCGC GCTGTTCGGC
TTCGGCTGGC TGCGCCATCT GCGCGCCGCC GACACCGCGA TCACCCGCGC CAACGCCCGC
TCGCTGGTCG ACGACTGGCT CTCCAATATG GGGCGCAACC GCACGGTGGG GCGGCGCCCG
GATGTGCTGG CGCGGCGGGT GATCTCGCTG TTGTCGCAGG CCCCCCTGGT GCTCGGCGAC
ACCGACGGAA AATTCTATCG CCGTTATCTG CGCGGCCTGA CCCGCGAGAT TCGCGCGCTG
CGCTATGCGC TGCTCGACGT GCCGGATGGC GTGCCGCGGC TGCAGGTGAT GATCGCGCTG
TGCTATGCGG CGCTCTGCCT CGCCAATCAG GCGCGCAACA TCCGCGGCGC GACCAAGCGG
CTGTCGGAGG AATTGCAGAG CCAGGTGCTG CCCGATGGCG GGCATGTGTC GCGCAATCCC
GGCGCGCTGA TCGAATTGCT GATCGATCTG CTGCCGCTGC GGCAGACTTT CGCCGCCCGC
AACATCGCCC CGCCGCCGGC GCTGCTCAAT GCCATCGACC GGATGATGCC GATGCTGCGG
TTCTTCCGCC ATGGCGACGG CAGCATCGCT TTGTTCAACG GCATGAGCGG CACGCCGTCG
GATCTGCTGG CGACGCTGCT CGCCTATGAC GACAGCCACG GCACGCCGAT GCCGAGTATG
CCGCATTCCG GCTACCAGCG GATCGACGCC GGATCGACGC TGGTGATCGT CGACGCCGGC
CTGCCGCCGC CGCCGAATGT CAGCCAGGAC GCCCATGCCG GCTGCCTGTC GTTCGAATTG
TCATCCGGAC AGTGCCGGAT CGTGACCAAT TGCGGAATGC CCGGCACCAA TCGCGAGAGC
TGGCGGGCCT TCGCGCGCAG CACGGTGGCG CATTCCACGG TCGCCTGCCA CGATACCTCG
TCCTGCCAGT TCATCGAGCG CTCGGCGATG AAGCGGCTGC TGCAGGGCGC GCCGATCGTC
AGCGGCCCGA CGCTGATCGA CAACCGCCGC GAGGCGGTTG CGGGCGGCGT GCTGCTGACC
ATGTCGCATG ATGGCTACCG CGGAAAACTG GGCGTCCTGC ATCAGCGGGT CATTATGGTG
AAGCATGACG GCAGCCGGGT CGACGGCGAG GATACGGTGT CGCCTGCGCA GGGCGGGCGC
CACCGCGCGG CGCAGGCCGA CTATGCGGTG CGGTTTCATC TGCATCCGTC GATCAAGGCG
ACCCGGCTCG TCGACGCCCA CGGGGTGATG CTGGTGCTGC CCAACCGCGA GGTCTGGACG
TTCGAGGCAC TGGACGACAA GGTCGATCTC GAAGACAGCG TGTTCCTCGC CGGCAATGAC
GGCCCGCGGC GCACGACCCA GATCGTGATC CGTCAGAATT CGATCGAGGC GCCGAACATC
CGCTGGAGCT TCATCCGCTC CAACGCCTCG CCGCAGGCGA CCAATGCGCG CCGCAATGCC
CGCCGCGAGC CGGAATTGCC GCTGTAA
 
Protein sequence
MPAELVQTKL RWTAKVADVL PNLKSAVRKA QKVDAFHEPG ALARVSSAQR KRISSLIVGR 
FARNMAARVS GGSAALTRLW PGRTDRLIIA PHDLRTADAT RAAEIYAGRF VFAGKIVTCH
GRSIFDLEPP SDDWEAALFG FGWLRHLRAA DTAITRANAR SLVDDWLSNM GRNRTVGRRP
DVLARRVISL LSQAPLVLGD TDGKFYRRYL RGLTREIRAL RYALLDVPDG VPRLQVMIAL
CYAALCLANQ ARNIRGATKR LSEELQSQVL PDGGHVSRNP GALIELLIDL LPLRQTFAAR
NIAPPPALLN AIDRMMPMLR FFRHGDGSIA LFNGMSGTPS DLLATLLAYD DSHGTPMPSM
PHSGYQRIDA GSTLVIVDAG LPPPPNVSQD AHAGCLSFEL SSGQCRIVTN CGMPGTNRES
WRAFARSTVA HSTVACHDTS SCQFIERSAM KRLLQGAPIV SGPTLIDNRR EAVAGGVLLT
MSHDGYRGKL GVLHQRVIMV KHDGSRVDGE DTVSPAQGGR HRAAQADYAV RFHLHPSIKA
TRLVDAHGVM LVLPNREVWT FEALDDKVDL EDSVFLAGND GPRRTTQIVI RQNSIEAPNI
RWSFIRSNAS PQATNARRNA RREPELPL