Gene RPD_0709 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0709 
Symbol 
ID4021182 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp797170 
End bp798366 
Gene Length1197 bp 
Protein Length398 aa 
Translation table11 
GC content64% 
IMG OID637960898 
Producthypothetical protein 
Protein accessionYP_567848 
Protein GI91975189 
COG category[R] General function prediction only 
COG ID[COG0820] Predicted Fe-S-cluster redox enzyme 
TIGRFAM ID[TIGR00048] radical SAM enzyme, Cfr family 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCTTG CCGCTGCTGC TCAGCTCGAG AAAACACCGC TGGAAACCTA TGTTCCGCCG 
GCCAAGCCGT CGCTGATCGG GCTGTCGCGC GCCGAACTGG CCGAGAGACT GGGCCACATC
GGCGTCGCGC CGGCGCAGCG CAAGATGCGC GCGCAGCAGC TGTGGAACTG GATGTATCTC
CGCGGCGCCC GGGATTTTTC CGAAATGACC AACGTCTCCA AGGAGATGCG GGCGCAGCTA
AGTGATCATT TCACGGTCGA CCGGCCCGAA GTGGTGGCCG AGCAGATTTC CAATGACGGC
ACCCGAAAAT GGCTGCTGCG GCTGCCGAGC GGCGACGACG TGCAGAAGGC GCACGAGGTC
GAATGCGTCT ACATTCCCGA GACCGACCGC GGCACGCTAT GCGTGTCCAG CCAGGTCGGC
TGCACGCTGA ACTGCTCGTT CTGCCACACC GGCACCCAGC GGCTGGTGCG CAACCTCACC
GCCGGCGAGA TCATCGGCCA GGTGATGGTG GCGCGCGATC GTCTCAATGA TTGGGTCGAC
CGCGAAACCC CGAACGGCAA CCGCCTCGTC ACCAACATCG TGATGATGGG GATGGGCGAG
CCGCTGTACA ATTTCGAGGC GGTGCGCGAC GCGCTGCTGA TCGTGACCGA CAACGAGGGC
ATCGGCATTT CGCGGCGGCG GGTGACGCTG TCGACCTCCG GCGTGGTGCC GAACATCATC
CGCACCGGCG AGGAGATCGG CGTGATGCTG GCGATCTCGC TGCACGCGGT GCGCGACGAA
TTGCGCGACG AGCTGGTGCC GCTCAACCGC AAATATCCGC TCAAGGAGTT GCTGCAGGCC
TGCCGCGACT ATCCCGGCGC CTCCAACGCC CGCCGCATCA CCTTCGAATA TGTGATGCTG
AAAGGCGTCA ACGACTCGCT CGACGATGCG CGGCGGCTGG TGCAACTGCT GAAGGGCATC
CCGGCCAAGA TCAATTTGAT CCCGTTCAAT CCGTGGCCGG GCTCGGCCTA CGAATGCTCG
GACTGGGACC AGATCGAGAA ATTCTCCGAA TACATCTTCA ACGCCGGCTA TTCGTCGCCG
GTGCGAACGC CGCGCGGCCG CGATATTCTG GCCGCCTGCG GCCAGTTGAA ATCGGAAACC
GAGAAGCTGT CGGTGCGCGA GCGCGACGCG TTGCGCGCGA TGGCGATGAC GGATTGA
 
Protein sequence
MTLAAAAQLE KTPLETYVPP AKPSLIGLSR AELAERLGHI GVAPAQRKMR AQQLWNWMYL 
RGARDFSEMT NVSKEMRAQL SDHFTVDRPE VVAEQISNDG TRKWLLRLPS GDDVQKAHEV
ECVYIPETDR GTLCVSSQVG CTLNCSFCHT GTQRLVRNLT AGEIIGQVMV ARDRLNDWVD
RETPNGNRLV TNIVMMGMGE PLYNFEAVRD ALLIVTDNEG IGISRRRVTL STSGVVPNII
RTGEEIGVML AISLHAVRDE LRDELVPLNR KYPLKELLQA CRDYPGASNA RRITFEYVML
KGVNDSLDDA RRLVQLLKGI PAKINLIPFN PWPGSAYECS DWDQIEKFSE YIFNAGYSSP
VRTPRGRDIL AACGQLKSET EKLSVRERDA LRAMAMTD