| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0623 |
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| Symbol | |
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| ID | 4021092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 705647 |
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| End bp | 708493 |
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| Gene Length | 2847 bp |
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| Protein Length | 948 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637960811 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | YP_567762 |
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| Protein GI | 91975103 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3383] Uncharacterized anaerobic dehydrogenase |
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| TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.816724 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCTGG TCCACGAAAT CGATTTCGGC ACGCCGCGTT CGCCATCCGA AACGATGGTG
ACGCTGACGA TCGACGGCCG CAGCGTGTCG GTGCCCGAAG GCACCTCGAT CATGCGTGCG
GCGATGGAGA TCGGCACCGC GATCCCGAAA CTGTGCGCCA CCGACATGGT CGACGCGTTC
GGCTCCTGCC GGCTGTGCCT GGTCGAGATC GACGGCCGCA GCGGCACGCC AGCGTCCTGC
ACCACGCCGG TCGCCGACGG CCTCGTGGTG AAGACCCAAA CCGAGCGGCT GAAGCAGATC
CGCAAGGGCG TGATGGAGCT GTATATCTCC GACCATCCGC TCGACTGCCT GACCTGTTCG
GCCAACGGCG ATTGCGAACT GCAGGACATG GCCGGCGCGG TCGGCCTGCG CGACGTGCGC
TACGGTTACT CCGGCAACAA GCATCCCAAT CCGGGGCTGG ATGAGTCCAA CCCGTATTTC
ACTTACGATG CGTCGAAGTG CATCGTCTGC TCGCGCTGCG TGCGCGCCTG CGAGGAGGTG
CAAGGCACCT TCGCACTGAC CATCGCCGGT CGCGGCTTCG GCTCGGTGGT GTCGCCGGGG
ATGCAGGAAT CCTTCCTCGG CTCGGAATGC GTTTCCTGCG GCGCCTGCGT GCAGGCCTGC
CCGACCGCGA CGCTGAACGA GAAATCGGTG ATCGAGATCG GCACGCCGGA GCGATCGGTG
GTGACGACCT GCGCCTATTG CGGCGTCGGC TGCACCTTCA AGGCGGAGAT GCGTGGCGAG
GAAGTGGTCC GCATGGTGCC GTACAAGGAC GGCAAGGCCA ATCGCGGCCA TTCCTGCGTC
AAGGGCCGGT TCGCCTGGGG CTACACCAAC CACAAGGAAC GCATCCTCAA GCCGATGATC
CGCGCCAGGA TCACCGACCC GTGGCGCGAG GTAAGCTGGG ACGAGGCGTT CTCCCATGCG
GCCTCGGAGC TGAAGCGCAT CCAGGCCAAA TACGGTCGCG ACTCGATCGG TGGCATCACC
TCGTCGCGCT GCACCAATGA AGAGACCTTC CTGGTGCAGA AGCTGATCCG CGCCGGCTTC
GGTAACAACA ATGTCGACAC CTGCGCGCGG GTCTGCCACT CGCCGACCGG CTACGGCCTC
TCCACCGCCT TCGGCACCTC GGCCGGCACC CAGGATTTCG ACTCGGTCGA GCACACCGAC
GTGGTGATGA TCATCGGCGC CAATCCGACC GACGGCCATC CGGTGTTCGC CTCACGGTTG
AAGAAGCGGC TGCGCGCCGG CGCCAAACTG ATCGTGGTCG ACCCGCGCCG GATCGACCTG
GTGCGCTCGG CCCATGTCGA GGCGGCGCAG CATCTGCCGC TGAAGCCCGG CACAAACGTC
GCGGTGCTGA CCGCGCTGGC GCATGTGATC GTCACCGAGG GGCTCGCCAA CGAAGCCTTC
GTGCGCGAAC GCTGCGACTG GAGCGAATAC GAGCACTGGG CGTCGTTCGT GGCGCAGCCG
AACAACAGCC CGGAAGCGAC CGCAGCGATG ACCGGCGTCG ATCCGCAAGC GCTGCGCGAA
GCGGCGCGGC TCTACGCCAC CGGCGGCAAC GGCGCGATCT ATTACGGCCT CGGCGTCACC
GAACACAGCC AGGGCTCGAC CACCGTGATG GCGATCGCCA ACCTGGCGAT GGTCACCGGC
AATCTCGGCC GCCAAGGTGT CGGCGTGAAC CCGCTGCGCG GCCAGAACAA CGTTCAGGGC
GCCTGCGACA TGGGCTCGTT CCCGCACGAG CTGCCCGGCT ATCGCCACAT CTCCACCGAC
GCGGTGCGCG ACAGCTTCGA GGCGCTGTGG GGCGTGACGC TGAACAGCGA ACCGGGCCTA
CGCATTCCCA ACATGCTCGA CGCCGCGGTC GATGGCTCGT TCAAGGCGCT CTATGTCCAG
GGCGAGGACA TTCTGCAGTC CGATCCCAAC ACCAAGCACG TCGCCGCCGG CCTCGAAGCG
ATGGAATGCG TGATCGTGCA CGATCTCTTC CTCAACGAGA CCGCGAACTA CGCGCATATC
TTCCTGCCGG GTTCGACCTT CCTGGAGAAG AACGGCACCT TCACCAATGC CGAGCGCCGC
ATCCAGCGGG TCCGCAAGGT GATGACGCCG AAGAACGGGC TGGAGGACTG GGAAGTCACG
CTTCGCCTCG CCGAGGCGAT GGGTTTCAAG ATGAGCTACG ATCACCCGTC GCAGATCATG
GACGAGATCG CCACGCTGAC GCCGACCTTC ACCGGCGTCT CCTACGCAAG ACTCGACGAG
CTCGGCTCGA TCCAGTGGCC GTGCAACGCC AACGCGCCGG AGGGCACGCC GGTGATGCAC
ATCGATCACT TCGTCCGCGG CAAGGGCAAG TTCGTCATCA CCGAATATGT CGCGACCGAC
GAGCGCACCG GGCCGCGCTT CCCGCTGCTG CTGACCACCG GCCGCATCCT GTCGCAGTAC
AATGTCGGCG CGCAGACGCG GCGCACCGCC AATACGGTAT GGCACGACGA GGACCGGCTC
GAAATCCATC CGCACGACGC CGAGCAGCGC GGCGTCAGGG ACGGCGATTG GGTGCGGCTG
GCGAGCCGCG CCGGCGAGAC GACGTTGCGC GCGCTGATCA CCGATCGGGT CGCGCCGGGC
GTGGTCTACA CCACGTTCCA CCATCCCGAC ACGCAAGCCA ATGTCGTCAC CACCGAATAT
TCCGACTGGG CGACCAATTG CCCGGAATAC AAGGTGACCG CGGTACAGGT GTCGCCGTCC
AATGGTCCGT CGGAGTGGCA GCGCGCCTAT GAGGAGCAGG CGACCGCGGC GCGCAGGATC
GCCTCGGCCG CCGAAGCCGC GGAGTGA
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| Protein sequence | MALVHEIDFG TPRSPSETMV TLTIDGRSVS VPEGTSIMRA AMEIGTAIPK LCATDMVDAF
GSCRLCLVEI DGRSGTPASC TTPVADGLVV KTQTERLKQI RKGVMELYIS DHPLDCLTCS
ANGDCELQDM AGAVGLRDVR YGYSGNKHPN PGLDESNPYF TYDASKCIVC SRCVRACEEV
QGTFALTIAG RGFGSVVSPG MQESFLGSEC VSCGACVQAC PTATLNEKSV IEIGTPERSV
VTTCAYCGVG CTFKAEMRGE EVVRMVPYKD GKANRGHSCV KGRFAWGYTN HKERILKPMI
RARITDPWRE VSWDEAFSHA ASELKRIQAK YGRDSIGGIT SSRCTNEETF LVQKLIRAGF
GNNNVDTCAR VCHSPTGYGL STAFGTSAGT QDFDSVEHTD VVMIIGANPT DGHPVFASRL
KKRLRAGAKL IVVDPRRIDL VRSAHVEAAQ HLPLKPGTNV AVLTALAHVI VTEGLANEAF
VRERCDWSEY EHWASFVAQP NNSPEATAAM TGVDPQALRE AARLYATGGN GAIYYGLGVT
EHSQGSTTVM AIANLAMVTG NLGRQGVGVN PLRGQNNVQG ACDMGSFPHE LPGYRHISTD
AVRDSFEALW GVTLNSEPGL RIPNMLDAAV DGSFKALYVQ GEDILQSDPN TKHVAAGLEA
MECVIVHDLF LNETANYAHI FLPGSTFLEK NGTFTNAERR IQRVRKVMTP KNGLEDWEVT
LRLAEAMGFK MSYDHPSQIM DEIATLTPTF TGVSYARLDE LGSIQWPCNA NAPEGTPVMH
IDHFVRGKGK FVITEYVATD ERTGPRFPLL LTTGRILSQY NVGAQTRRTA NTVWHDEDRL
EIHPHDAEQR GVRDGDWVRL ASRAGETTLR ALITDRVAPG VVYTTFHHPD TQANVVTTEY
SDWATNCPEY KVTAVQVSPS NGPSEWQRAY EEQATAARRI ASAAEAAE
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