Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_0547 |
Symbol | |
ID | 4021015 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 620619 |
End bp | 621365 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637960734 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_567686 |
Protein GI | 91975027 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00539118 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.224466 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGATC GCGTCGTCGT CATCACCGGC GGCAGCCGCG GCATCGGCCG CGCCACCGCG CTCGCCGCCG CCGCCCGCGG CTTCAAGGTC GTGGTCGGCT ACGCCAGCAA CGAAGAGGCG GCGCGCACCG TCGTTTCGGA GATCGAAGCC CGCAACGGCA AGGCGATCGC GGTGAAATGC GACGTCGGCA GCGAGCCCGA TATCCTGGCG CTGTTCGCAG CCGCTGATCA ATTCGGAACG CTCGGCGCGT TGGTCAACAA TGCCGGCATC GTCGGGCCGA CGACGCGGGT CGACGAGATG TCGGCCGAGC GAATCCAGCG GATGATGGCG GTCAACGTCA CCGGAAGCAT CCTGTGCGCG CGCGAGGCGG TGAAGCGGCT GTCGACCCGC CATGGTGGGC CGGGCGGCGT GATCGTCAAC CTGTCCTCGG TCGCCGCCAA GCTCGGCTCG CCGAATACTT ATGTCGACTA CGCCGCCTCC AAGGGCGCGA TCGATTCCTT CACGGTCGGT CTCGGCCATG AGGTCGCGGG CGAAGGCATC CGCGTCGCCG CGATCCGGCC CGGCCTGATC GACACCGACA TCCATGCCTC GGGCGGCGAT CCCGACCGCG CACACCGGCT CAGCGCCAAC GTGCCGATGC AGCGCGTCGG CCGCGCCGAG GAAATCGCCA ATGCCATCGT CTGGCTGATG TCCGACGAGG CCTCCTACGT CACCAGCGCG ATCCTCGATG TTTCGGGCGG ACGGTAG
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Protein sequence | MNDRVVVITG GSRGIGRATA LAAAARGFKV VVGYASNEEA ARTVVSEIEA RNGKAIAVKC DVGSEPDILA LFAAADQFGT LGALVNNAGI VGPTTRVDEM SAERIQRMMA VNVTGSILCA REAVKRLSTR HGGPGGVIVN LSSVAAKLGS PNTYVDYAAS KGAIDSFTVG LGHEVAGEGI RVAAIRPGLI DTDIHASGGD PDRAHRLSAN VPMQRVGRAE EIANAIVWLM SDEASYVTSA ILDVSGGR
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