| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0516 |
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| Symbol | |
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| ID | 4020984 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 588401 |
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| End bp | 589297 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637960703 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_567655 |
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| Protein GI | 91974996 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGAAA GCCACCCAGA TCAATTCGAC GTGCCGGAAC TGTCGCCCGA GGATATTCAG
GCGCGGGTGC TGCATCGCGA CGGGCTGATG CTGGTGATCG ACAAGCCGGC CGGCCTGCCG
GTGCATCGCG GCCCCAAGGG CGGGCCGAAT CTCGAAACCT CGTTCGAATT CCTGCGGTTC
GGTCTGCCGC GCCCGCCGGT GCTGGCGCAT CGGCTCGACC GCGACACCTC CGGCTGCCTG
GTGCTCGGCC GCCACCGCAA GGCCACCGCA ACGCTCGGGC TGCTGTTCAA ACACAGCAAG
ATTTCAAAAA CCTACTGGGC GATCGTCGAG GGCGGTCCGG AGCAGGACCA TGGCACCATC
GACCTGCCGA TCGGCCGCCT CAACGCCGAG CGCGGCTGGT GGCAGAAGGT CGATCCCGAG
GGCCTGCCGT CGCTGACGAA GTGGACGGTG CTGGGGCGGT CCCATCCTGT TGCGCCCGCG
CCTGCTGCGA TCAGCAGTGA GCCTGTGGCA AGCGACTCCT CTCCCCCTTG CGGGGAGGGG
TCGGGGGTGG GGGTCGACAA CGGGAGCTTC GCTTCGGGGG CCCCCCACCC CACCCCTCCC
CCGCAAGCGG GAGAGGGAGC AGGCGGTGCG CGTGGAAAGC GCCTCACCTG GCTCGCCCTC
GAACCCATCA CCGGCCGCAC CCATCAATTG CGGGTGCATT GCGCGGCGAT GGGCTGGCCG
ATCGTCGGCG ACAACATCTA TGGCAACGGC CCGCGCTTCG GCGAACCGAA GCTGCATCTG
CACGCGCGCG AGATCGTCAT CCCGTTGTCG CGCAACAAGC CGCCGGTGAT CGTCACCGCG
CCGCCGCCGC CGCATCTGCA CCCGCGGCTT GCGGCGTGTG GCTGGAGCGG CGCGTAG
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| Protein sequence | MNESHPDQFD VPELSPEDIQ ARVLHRDGLM LVIDKPAGLP VHRGPKGGPN LETSFEFLRF
GLPRPPVLAH RLDRDTSGCL VLGRHRKATA TLGLLFKHSK ISKTYWAIVE GGPEQDHGTI
DLPIGRLNAE RGWWQKVDPE GLPSLTKWTV LGRSHPVAPA PAAISSEPVA SDSSPPCGEG
SGVGVDNGSF ASGAPHPTPP PQAGEGAGGA RGKRLTWLAL EPITGRTHQL RVHCAAMGWP
IVGDNIYGNG PRFGEPKLHL HAREIVIPLS RNKPPVIVTA PPPPHLHPRL AACGWSGA
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