| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0514 |
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| Symbol | dapF |
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| ID | 4020982 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 586253 |
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| End bp | 587134 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637960701 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_567653 |
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| Protein GI | 91974994 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.2458 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCGC TGGACAATCG CCTCTTCGCC AAGATGAACG GCATCGGCAA CGAGATCGTC
GTGGTCGATC TGCGCGATCA GCCGGCGCCG GTCACGCCGG ACGATGCGCG CGCGGTGGCG
GCGCATCTGC CCTATGATCA GCTGATGCTG TTGCAGCCGG CGCGGCTGCC CGGCACCGAG
GCGTTCGTCC GGATCTACAA CAATGACGGA TCCGAAGCCG GCGCCTGCGG CAACGGCATG
CGCTGCGTCG CCCGGCAGAT GTTCGCATCG ACCGACAAGC AGGGACTGAC TTTCGAGACC
CGCGCCGGTC TGCTGAATTG CTGGCGGGGA CCGGCCGACG GGCTCTACAC TGTCGACATG
GGCGAGCCGA AGTTCGGCTG GAAGGACATT CCGCTCGCCG AGGAATTTCG CGACACCCGA
TCGATCGAGC TGCAAATCGG GCCGATCGAC GCGCCGTTGC TGCACACCCC CTCGGTCGTC
AGCATGGGCA ATCCGCACGC GATCTTCTGG GTCGACGACA TCGAGGCCCA CGATCTCGGC
CGGTTCGGGC CGCTGCTGGA AAACCATCCG ATCTTTCCGG AGCGCGCCAA CATCACGCTC
GCCCATATCG TCGATCGCGA TCACATCACG ATGCGGACCT GGGAGCGCGG CGCGGGACTG
ACCCGGGCCT GCGGCTCGGC CGCCTGCGCC ACGGCGGTGG CGGCGGCGCG GCTCAAGCGG
GCCGATCGCG TCGTCGAAAT GACGCTGCCG GGCGGCCAAC TCAGCATCGC GTGGCGCGAG
AGCGACAATC ACGTGCTGAT GACCGGCGGC GCGACCTTCG AGTTCGAGGG CCGGTTCGAT
CCGGCGCTGT TCGCCCGTTC ACGCGACAAG ACCTCGGCCT GA
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| Protein sequence | MSALDNRLFA KMNGIGNEIV VVDLRDQPAP VTPDDARAVA AHLPYDQLML LQPARLPGTE
AFVRIYNNDG SEAGACGNGM RCVARQMFAS TDKQGLTFET RAGLLNCWRG PADGLYTVDM
GEPKFGWKDI PLAEEFRDTR SIELQIGPID APLLHTPSVV SMGNPHAIFW VDDIEAHDLG
RFGPLLENHP IFPERANITL AHIVDRDHIT MRTWERGAGL TRACGSAACA TAVAAARLKR
ADRVVEMTLP GGQLSIAWRE SDNHVLMTGG ATFEFEGRFD PALFARSRDK TSA
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