| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0429 |
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| Symbol | trmE |
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| ID | 4020895 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 492960 |
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| End bp | 494348 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637960614 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_567568 |
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| Protein GI | 91974909 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGATGC ATCCGAGCGA CCAAACCATC TTTGCACTGG CCACCGGGCA ATTGCCGTCG
GCGATCGCGA TGGTGCGCGT CTCGGGTCCG CGCGCCGGCG ATCTGCTGAC GGCGCTGACG
GGATCGCTGC CGCCGCCGCG GACTGCCCGC CGCGTTCTGA TCCGCGATCA AAATCAAGAC
CTTATCGATG ACGGCGTGGC GCTTTGGTTT GCCGGGCCTG CGAGCGCCAC GGGCGAGGAC
GTCGCCGAAT TCCACATCCA TGGCGGCCGC GCGGTGCTGG CGGCGCTGGT CAGGGCGCTG
TCGGCGTTCG ACGGCGTGCG GCCGGCCGAG CCGGGCGAGT TCACCCGGCG GGCGTTCGAG
AACGGCAAGC TCGATCTGAC CGAGGCGGAG GGGCTCGACG ATCTGATCCA CGCCGACACC
GAGGCGCAGC GGCGCCAGGC GGTGCGGCAG CTCGGCGGTC TGCTCGGCGA CCGGGCGCGG
CGTTGGCGGG CGCAGATCAT CGAAGCGACG GCACTGATCG AAGCCGGAAT CGACTTCGCC
GACGAAGGCG ACGTGCAGGG CGAGCTGATG GCGCCGGCGC TGCAAACGAT CGCGGCGTTG
CATGACGAGA TCGCAGAAGT GCTTGCGGCA CAGGGCCGAA GTGAAAGGCT GCGGGACGGA
ATGGTGGTCG CGATCGCCGG GCCGCCGAAT GTCGGCAAGT CGACGCTGAT CAATCGGCTG
GCGCGGCGCG AGGTCGCAAT CGTCTCGCCT CATGCCGGCA CAACGCGCGA TGTGATCGAG
GTGCAGCTCG ATCTTGGCGG CTATCCGGTG ACGGTGATCG ACACCGCGGG CATTCGCGAA
AGCAATGACC CGGTCGAGCA GGAAGGCGTG CGGCGGGCGC GGGCGCGGGC TGCGGAGGCC
GACCTGGTCC TATGGCTCGG CGAAGGCGAA ATGACCGGCG ATGCGGTCGC GGCGTCGGCG
CCGGTCTGGC GGGTGCGCAA CAAGATCGAT CTGCGGGGCG GGGAGGGGGA CGGCGGTCCG
GTCGGTCTGC CGGTCGAACC TCTCGCTGCG GCGTTGCGGC AAACCGATGG CGCTTGGGGC
GGAAATGCGG CGTTTGAAAT TTCAGCGTTG CGGGGCCAGG GGCTCGGCGA GCTGATCGCG
GCGATCGAGG ATTTTGCGGC GCAGTATTTC GCCAGCGGCG AGACGGCGCT GATCAGCCGG
GCGCGGCATC GCACTTTGCT GCAGGATGCT GCAGCAATGC TGCAACGCAG TCTGCAGCAT
GACCTGCCCG CTGAGCTGGT CGCCGAGGAA CTGAGGCTGG CGGGCGTGGC TCTGGGCCGA
CTGCTCGGCC GGGTCGACGT CGAGGACGTC CTCGGGGAAA TCTTCAGCCG GTTCTGCATC
GGCAAGTGA
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| Protein sequence | MRMHPSDQTI FALATGQLPS AIAMVRVSGP RAGDLLTALT GSLPPPRTAR RVLIRDQNQD
LIDDGVALWF AGPASATGED VAEFHIHGGR AVLAALVRAL SAFDGVRPAE PGEFTRRAFE
NGKLDLTEAE GLDDLIHADT EAQRRQAVRQ LGGLLGDRAR RWRAQIIEAT ALIEAGIDFA
DEGDVQGELM APALQTIAAL HDEIAEVLAA QGRSERLRDG MVVAIAGPPN VGKSTLINRL
ARREVAIVSP HAGTTRDVIE VQLDLGGYPV TVIDTAGIRE SNDPVEQEGV RRARARAAEA
DLVLWLGEGE MTGDAVAASA PVWRVRNKID LRGGEGDGGP VGLPVEPLAA ALRQTDGAWG
GNAAFEISAL RGQGLGELIA AIEDFAAQYF ASGETALISR ARHRTLLQDA AAMLQRSLQH
DLPAELVAEE LRLAGVALGR LLGRVDVEDV LGEIFSRFCI GK
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