Gene RPD_0352 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0352 
Symbol 
ID4020817 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp416057 
End bp416791 
Gene Length735 bp 
Protein Length244 aa 
Translation table11 
GC content63% 
IMG OID637960536 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_567491 
Protein GI91974832 
COG category[R] General function prediction only
[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value6.16439e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTGCCC CAGTCGTCGT TATCACGGGC GCAGCCCGAG GAATCGGATC GGCCGCGGCG 
TCCACCTTCC TGGACCATGG CTGGCGGGTT CATGGCCTCG ACCGACGCGC GCCATTGATC
AAGGGAGCTA TCGGCCACGA ATGCGACGTG ACCAGCGAAG AGCAGCTCCT TTCCGTGGCG
GAACGAATCG GCCCTATCGA CGCGTTGGTG CCTGGCGCCG GCATCAATCT GCGTCCGCAT
GACAATGCTG CGGAAAAGCT GACTTTGGAG GCCTGGAATC GCACCATTGC CGTGAACCTC
ACGGGCGTGA TGCTGACGGT CCGCGCGTTT CGACCCAGGA TACGTGCCGA CGGCGCGATC
GTTCTCATCA GCAGCGTCGC AGCATTGCGT GCGATGCCCC ACTCGGATGC TTATACGGCC
AGCAAAGGCG CGATTGTCGC GCTCACCAGA AGCTGGGCCG TCGATTACAG CCGGGATGGT
ATACGGGTGA ACTGTGTGGC GCCGGGGCCT ACCGATACCG AGATGATGTC CGGGCTCCGC
GATGGATACG CTGTCGAGCG ACAGGTGCAG CTTCCTCAGC AACGCATGGC GACTGCGGGC
GAAGTTGCGC AAGTCATCCG TTTCCTTGCA TCCGACCAGG CTTCCTACGT GTCCGGCGCC
ATCGTCCCTG TCGATGGCGG CGCCGTCGCG CACAGCGCGG GCGTTCCATT TCCGCGGAGA
CGTCCCAAAC CATAG
 
Protein sequence
MSAPVVVITG AARGIGSAAA STFLDHGWRV HGLDRRAPLI KGAIGHECDV TSEEQLLSVA 
ERIGPIDALV PGAGINLRPH DNAAEKLTLE AWNRTIAVNL TGVMLTVRAF RPRIRADGAI
VLISSVAALR AMPHSDAYTA SKGAIVALTR SWAVDYSRDG IRVNCVAPGP TDTEMMSGLR
DGYAVERQVQ LPQQRMATAG EVAQVIRFLA SDQASYVSGA IVPVDGGAVA HSAGVPFPRR
RPKP