| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0255 |
|---|
| Symbol | |
|---|
| ID | 4020713 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 294048 |
|---|
| End bp | 295541 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637960434 |
|---|
| Product | succinic semialdehyde dehydrogenase |
|---|
| Protein accession | YP_567396 |
|---|
| Protein GI | 91974737 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.666888 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCCGA CCACTGCCGC CCGCAAATCC GATGCCGCTT CCTCGCTGCG CGATCGTCTG
AAGGACCCGT CGCTGCTGCG CGAACAGTGC TTCATCGACG GCGCCTGGAT CGGCACGGGC
GCCACCGTGG TGACCAATCC GGCCAATGGG CAGGAACTCG GCAAGGTGCC GAAGATGGGG
GCGGATGAGA CGACGCAGGC GGTCGAGGCG GCCGCGCGCG CGTTTCCGGC CTGGGCCAAG
CTCACCGCCA AGCAGCGCTC CAACATCTTG CGCAAATGGT TCGAGCTGAT CGTCGCCCAT
CGCGAGGACC TGGCGCTGAT CCTGACCTCC GAACAGGGCA AGCCGCTGGC CGAAGCGCTC
GGCGAGGTCG ACATCGGCGC GGCCTATGTC GAGTTCTTCG CCGAGGAGGC GCGCCGGGTC
TATGGCGAGA CCATCCCGAC GCAGCGCGCT GACGCAAGGC TGATCGCGAT CAAGCAGCCG
ATCGGCGTCT GCGGCGCGAT CACGCCATGG AACTTCCCGA ATTCGATGAT CACCCGCAAA
GTGTCGCCGG CGCTGGCTGC CGGCTGCCCG GTGGTGCTGA AGCCCGCCAA CGAAACCCCG
TTCAGCGCGC TGGCGCTGGC GGCGCTGGCC GAAAAGGCCG GCGTGCCGAA AGGCGTGTTC
AACGTCGTCA CCGGCCATGC GTCGGCGATC GGCAAGGTGC TGTGCGAGCA TCCGGCGGTG
CGCTTCGTCG GCTTCACCGG CTCCACTGAA GTCGGCAAGA TCCTGTACCA GCAGGCCGCC
GTCGGGGTGA AGAAGCTCGG TCTCGAACTC GGCGGTAACG CGCCGTTCAT CGTGTTCGAC
GATGCCGACA TCGACGCCGC GGTAGAAGGC GCGATGGTCT CGAAATATCG CAACATGGGC
CAGACCTGCG TCTGCGCCAA CCGCATCTAC GTCCAGGACA GCGTCTATGA TGCGTTCGTC
GACAAGCTCG CCGCGAAGGT CTCGGCGATG AAGATCGGCG ACGGCGCCGA ACCGGGCGTG
ACGCAGGGCC CGCTGATCAA CGAAGCCGCG GTCGAGAAGA CCGAGAACCA TATCGCGGAC
GCGGTGGCGC ACGGCGCCAA GGTGATCGTC GGCGGCAAGC GCCACGCGCT CGGCGGCACC
TTCTTCGAGC CGACCGTGCT GGCGAATGTG CGGCCGGATG CGCTGGTGGC GCATGAGGAG
ACGTTCGGCC CGTTGGCGCC GGTGTTCCGC TTCAAGGACG AGGCCGAAGT CATCCGGCTC
GCCAACAACT CGCCGTTCGG TCTGGCGAGC TACTTCTACG CCCGCGACAT CGGCCGGGTG
TGGCGCGTCG CCGAAGCGCT GGAGAGCGGC ATGGTCGGCG TCAATTCCGG CCTGATCACC
ACCGAAGTCG CCCCGTTCGG CGGCGTCAAG GAAAGTGGCC TCGGCCGCGA AGGCTCGCAT
CACGGCATGG AAGAATATGT CGAGATCAAA TACGTGATGA TGGCGGGGAT CTAA
|
|---|
| Protein sequence | MSPTTAARKS DAASSLRDRL KDPSLLREQC FIDGAWIGTG ATVVTNPANG QELGKVPKMG
ADETTQAVEA AARAFPAWAK LTAKQRSNIL RKWFELIVAH REDLALILTS EQGKPLAEAL
GEVDIGAAYV EFFAEEARRV YGETIPTQRA DARLIAIKQP IGVCGAITPW NFPNSMITRK
VSPALAAGCP VVLKPANETP FSALALAALA EKAGVPKGVF NVVTGHASAI GKVLCEHPAV
RFVGFTGSTE VGKILYQQAA VGVKKLGLEL GGNAPFIVFD DADIDAAVEG AMVSKYRNMG
QTCVCANRIY VQDSVYDAFV DKLAAKVSAM KIGDGAEPGV TQGPLINEAA VEKTENHIAD
AVAHGAKVIV GGKRHALGGT FFEPTVLANV RPDALVAHEE TFGPLAPVFR FKDEAEVIRL
ANNSPFGLAS YFYARDIGRV WRVAEALESG MVGVNSGLIT TEVAPFGGVK ESGLGREGSH
HGMEEYVEIK YVMMAGI
|
|---|
| |