| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0233 |
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| Symbol | nusA |
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| ID | 4020691 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 270895 |
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| End bp | 272517 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637960412 |
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| Product | transcription elongation factor NusA |
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| Protein accession | YP_567374 |
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| Protein GI | 91974715 |
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| COG category | [K] Transcription |
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| COG ID | [COG0195] Transcription elongation factor |
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| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.157572 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGTCA GCGCCAACAA GCTTGAATTG CTGCAGATCG CCGACGCGGT AGCGCGGGAG
AAATCGATCG ACCGCGGCAT CGTGATCGCG GCGATGGAAG ACGCGATCGC CAAGGCCGCG
CGCGCCCGCT ACGGCTCGGA GACCGACGTT CACGCCGAGA TCGACGCCAA GAAGGGCGAG
CTGCGGCTGT CGCGCCACAT GCTGGTCGTC GATAAGGTCG AGAACGCCGC CAACCAGATT
TCGCTGAAGG ACGCGCAGCG CGCCAATCCC GGCGCGCAGA TCGGCGACAC CATCGCCGAC
ACCCTGCCGC CGCTGGAATA CGGCCGCATC GCCGCGCAGT CGGCCAAGCA GGTGATCGTG
CAGAAGGTGC GCGAGGCCGA GCGCGACCGG CAATACATGG AGTTCAAGGA CCGCATCGGC
GACGTCGTCA ACGGTGTCGT CAAGCGCGTC GAATACGGCA GCGTGATCGT CGATCTCGGC
CGCGGCGAGG CGATCGTGCG CCGCGACGAG ATGCTGCCGC GCGAATCGTT CCGCAACGGC
GACCGCGTCC GCGCCTACAT CTTCGACGTT CGCCGCGAGA CCCGCGGCCC GCAGATCTTC
CTGTCGCGCA CCCACCCGCA ATTCATGGCG AAGCTGTTTC AGCAGGAAGT GCCGGAAATC
TACGACGGCA TCGTCGAGAT CAAGGCGGTC GCCCGCGATC CCGGCTCGCG CGCCAAAATC
GGCGTGGTGT CGCGCGACAG CTCGGTCGAT CCGGTCGGCG CCTGCGTCGG TATGCGCGGT
TCGCGCGTCC AGGCGGTGGT CAACGAGCTG CAGGGCGAGA AGATCGACAT CATCCCGTGG
TCGCCCGACA TCGCGACCTT CGTGGTCAAC GCGCTGGCCC CGGCGGAAGT CTCGAAAGTC
GTGATCGACG AAGACCGCGA GCGGATCGAG GTTGTCGTTC CGGACACCAA TAACCAACTA
TCCCTTGCGA TCGGTCGTCG CGGCCAGAAC GTCCGTCTGG CGTCGCAGCT CACCGGCTGG
GACATCGACA TTCTGACCGA GACCGAGGAA TCCGAGCGCC GCCAGGCCGA TTTCGAGAAT
TCGACCCGGG TGTTCATGGA AGCGTTGAAC GTCGACGAAG TGGTCGGCCA GCTGCTCGCC
TCCGAAGGCT TCACCTCGGT CGAGGAACTG GCGATGGTCG ATATCCGCGA ACTGGCCTCG
ATCGAAGGTT TCGACGAGGA GACCGCGACC GAATTGCAGG CTCGCGCCGC CGAATATCTC
GACCGCGTCG AGACCGAGCT GGAAGCGCGG CGGCAGGAAC TCGGCGTCGA GGACGCGCTC
AAGGACGTCC CCGGCGTTAC CTCGAAGATG CTGGTCAAGC TCGGCGAGGG CGACGTCAAG
ACGGTCGAGG ATCTGGCCGG CTGCGCCACC GACGATCTGG TCGGCTGGAC CGAGCGCAAG
GAAGGCGCCG AGCCGGTGAA GTATGCTGGC ATTCTCGACG GCGTCGAGAT GACGCGCGAC
GACGCCGAAC ATCTGATCAT GCAGGCCCGC GTCAAGGCCG GCTGGATCAC CGAGGAAGAA
CTCGCCCAGA CTGCCGACAA GGGCGAGGAC GCCGGTGCGG AGACCGAAGG CGCGGCGGAG
TAA
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| Protein sequence | MAVSANKLEL LQIADAVARE KSIDRGIVIA AMEDAIAKAA RARYGSETDV HAEIDAKKGE
LRLSRHMLVV DKVENAANQI SLKDAQRANP GAQIGDTIAD TLPPLEYGRI AAQSAKQVIV
QKVREAERDR QYMEFKDRIG DVVNGVVKRV EYGSVIVDLG RGEAIVRRDE MLPRESFRNG
DRVRAYIFDV RRETRGPQIF LSRTHPQFMA KLFQQEVPEI YDGIVEIKAV ARDPGSRAKI
GVVSRDSSVD PVGACVGMRG SRVQAVVNEL QGEKIDIIPW SPDIATFVVN ALAPAEVSKV
VIDEDRERIE VVVPDTNNQL SLAIGRRGQN VRLASQLTGW DIDILTETEE SERRQADFEN
STRVFMEALN VDEVVGQLLA SEGFTSVEEL AMVDIRELAS IEGFDEETAT ELQARAAEYL
DRVETELEAR RQELGVEDAL KDVPGVTSKM LVKLGEGDVK TVEDLAGCAT DDLVGWTERK
EGAEPVKYAG ILDGVEMTRD DAEHLIMQAR VKAGWITEEE LAQTADKGED AGAETEGAAE
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