| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0217 |
|---|
| Symbol | |
|---|
| ID | 4020675 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 249040 |
|---|
| End bp | 250041 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637960396 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
|---|
| Protein accession | YP_567358 |
|---|
| Protein GI | 91974699 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.660632 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0271451 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGTTA AGAAAAAGCC TCTGGTCGTC GTTACCCGCA AGCTTCCGGA CTCGATCGAA
ACCCGGATGC GCGAACTATT CGACGCGCGT CTCAATCTCG ACGACGTGCC GATGTCCGCG
GACCAGCTCG CCGAGGCGGC GCGCACCGCC GACGTGCTGG TGCCGACCGT GACCGACACC
ATCACCAGCG CGATGCTGAA CCAGCCCGAC TGCACGCTGC GGCTGATCGC GCATTTCGGC
AACGGAATCG ACAATCTCGA CGTCGCAGCG GCTCATGCCC GCGGCATCAC CGTCACCAAC
ACGCCGAAGG TCCTGACCGA AGATACCGCC GACATGACGA TGGCGCTGAT TCTCGCGGTG
CCGCGTCGGC TGATCGAGGG CGCAGCTTTA CTCACCGACG GCGGCGAGTG GCCCGGCTGG
TCGCCGACCT GGATGCTCGG CCGCCGGCTC GGCGGCAAGC GCCTCGGCAT CATCGGCATG
GGCCGGATCG GCCAGGCGGT GGCGCGCCGC GCCCGCGCCT TCGGGCTGCA GATCCATTAC
CACAACCGCA AGCCGGTGGC GCCGCGGATC GCCGACGAGC TGGGCGCGAC CTATTGGGAT
TCGCTCGACC AGATGCTGGC GCGGATGGAC ATCATCTCGG TCAATTGTCC GCACACGCCG
GCGACCTTCC ATTTGCTGTC GGCGCGCCGG CTGAAACTGA TCCGCAAGGA TGCCTTCATC
GTCAACACCG CGCGCGGCGA GGTGATCGAC GAGGAGACGC TGACCCGGCT GATCGAAACC
GGCGACATCG CCGGCGCCGG CCTCGACGTC TACGAGCACG AGCCGGTGGT CAATCCGAAG
CTGGTGCGGC TGGCCAAGGC CGGCAAGGTG GTGCTGCTGC CGCATATGGG CTCGGCCACC
ATCGAAGGCC GCGTCGAGAT GGGCGAGAAG GTGATCATCA ACATCCGCAC CTTCCTCGAC
AACCACAAGC CGCCGGATCG CGTCCTGCCC GCGATGCTGT AA
|
|---|
| Protein sequence | MSVKKKPLVV VTRKLPDSIE TRMRELFDAR LNLDDVPMSA DQLAEAARTA DVLVPTVTDT
ITSAMLNQPD CTLRLIAHFG NGIDNLDVAA AHARGITVTN TPKVLTEDTA DMTMALILAV
PRRLIEGAAL LTDGGEWPGW SPTWMLGRRL GGKRLGIIGM GRIGQAVARR ARAFGLQIHY
HNRKPVAPRI ADELGATYWD SLDQMLARMD IISVNCPHTP ATFHLLSARR LKLIRKDAFI
VNTARGEVID EETLTRLIET GDIAGAGLDV YEHEPVVNPK LVRLAKAGKV VLLPHMGSAT
IEGRVEMGEK VIINIRTFLD NHKPPDRVLP AML
|
|---|
| |