Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_0121 |
Symbol | |
ID | 4020577 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 138971 |
End bp | 140191 |
Gene Length | 1221 bp |
Protein Length | 406 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637960298 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_567262 |
Protein GI | 91974603 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.455844 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAGCC TGTATCGGGC CGCAGCCGCG GCTGTAGCTG CAATCGCTCT CACAGCCGCG CCCGCCGCGG CACAGAAGAA ATACGACACC GGCGCCACCG ACACCGAAAT CAAGATCGGC CAGACCGTGC CGTTCTCCGG TCCCGCTTCG GCCTATGCCG GTATCGGCAA AACCCAGGCC GCCTATATGC GGATGATCAA CGATTCCGGC GGAATCAATG GCCGCAAGAT CAACCTCATT CAATATGACG ACGCCTATTC GCCGCCCAAG GCGGTCGAGC AGGTGCGCAA GCTGGTCGAA GGCGACGAGG TTCTGCTGAC CTTCCAGATC ATCGGGACGC CGTCGAACGC CGCGGTGCAG AAATATCTCA ACGGCAAGAA GGTGCCGCAG CTGCTCGCCT CGACCGGCGC GACCCGCTTC ACCGATCCGA AGAGTTTCCC CTGGACGATG GGCTACAACC CGAACTACCA GACCGAAGCC CGGATCTATG CGCGCTACAT CCTGAAGAAC CACCCCAATG CCAAGATCGG CATCATGTAC CAGAACGACG ACCTGGGGCG TGATTACCTC GCCGGGCTGA AGGCGGGACT CGGCGACAAG GCCGCCGCGA TGATCGTGGC GGAGACCTCC TACGAACTGT CCGACCCGAC CGTCGACTCG CAGATCGTCA AGCTCAAGGC CGCCGGCGTC GACCTCTTCT TCAACGCCTC GACGCCGAAA TTCGCCGCGC AGGCGATCAA GAAGGTCGCC GACCTCGACT GGCGCCCGAT CCACATTCTC GACATCAATG CGAGCCCGGT GTCCTCGACG CTGAAACCGG CGGGCCTGGA CATCTCCAAG GGCATCATCA GCGTCAATTA CGGCAAGGAC CCGGCCGACC CGCAATGGAA GGACGATCCC GGCGTCGCGA AATATCTCGC CTTCATGGAC AAGTACTATC CGGAGGGTGA CAAGATGTCG ACGATCAACA CCTACGGCTA CTCGACCGCG CAATTGCTGG TCACCATCCT GAAGCAATGC GGCGACGACC TCACCCGCGA CAACGTCATG AAACAGGCGG CGAATCTCAA GAACGTGACC GGCGACCTGT CGCTGCCGGG CATGGTGATC AACACCTCGC CGACCGATTA TCGCATCAAC AAGCAGCTTC AGATGATGAA GTTCAACGGC GAGCGCTGGG AGCTGTTCGG CCAGATCATC GAAGACGACC AAGCGATGTA A
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Protein sequence | MKSLYRAAAA AVAAIALTAA PAAAQKKYDT GATDTEIKIG QTVPFSGPAS AYAGIGKTQA AYMRMINDSG GINGRKINLI QYDDAYSPPK AVEQVRKLVE GDEVLLTFQI IGTPSNAAVQ KYLNGKKVPQ LLASTGATRF TDPKSFPWTM GYNPNYQTEA RIYARYILKN HPNAKIGIMY QNDDLGRDYL AGLKAGLGDK AAAMIVAETS YELSDPTVDS QIVKLKAAGV DLFFNASTPK FAAQAIKKVA DLDWRPIHIL DINASPVSST LKPAGLDISK GIISVNYGKD PADPQWKDDP GVAKYLAFMD KYYPEGDKMS TINTYGYSTA QLLVTILKQC GDDLTRDNVM KQAANLKNVT GDLSLPGMVI NTSPTDYRIN KQLQMMKFNG ERWELFGQII EDDQAM
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