Gene RPD_0111 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0111 
SymbolargJ 
ID4020567 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp124701 
End bp125942 
Gene Length1242 bp 
Protein Length413 aa 
Translation table11 
GC content68% 
IMG OID637960288 
Productbifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 
Protein accessionYP_567252 
Protein GI91974593 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1364] N-acetylglutamate synthase (N-acetylornithine aminotransferase) 
TIGRFAM ID[TIGR00120] glutamate N-acetyltransferase/amino-acid acetyltransferase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.739533 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCTCTT CCGTCTCCCC GCTCGCGCCG ACCAACGTTC CCACGCTGCC GGACCTCGCC 
GGCGTCCGCC TCGCCACCGC GGCGGCCGGC ATCCGCTACA AGGGCCGCAC CGATGTGTTG
CTGGTCGCGC TCGATCCGGG CACGGCGGTC GCCGGCGTGT TCACCAAGTC GAAATGCCCG
TCGGCGCCGG TCGAATGGTG CCGCGACAAG CTCAAGGGCG GCAGCGCCCG CGTGCTGGTG
GTCAATTCCG GCAACGCCAA CGCGTTCACC GGAAAAACCG GCCGGCAGGC GACGACGCTG
ACGGCGTCGA TCGCGTCCAA GGCGATCGGC TGCAAGCCGG CCGAAGTGTT TCTCGCCTCC
ACCGGCGTGA TCGGCGAGCC GCTCGACGCG ACGAAGTTCG ACGGCGTGCT GGGCAAGCTC
GCCGAGACCG CGCAGCCGGG CGGCTGGATG GAGGCGGCCC GTGCGATCAT GACAACCGAC
ACCTTCCCCA AGGTGGCGAC CGCCACCGTG AAGATCGGCA AGACCAAGGT CACCATCAAC
GGCATGGCCA AGGGCGCCGG CATGATCGCG CCCGACATGG CGACGATGCT GTCCTTTGTC
TTCACCGACG CGCCGTTGTC GGCGTCCTGC CTGCAGGCGC TGCTGAAGGC CGGGGTCGCC
GATACGTTCA ACGCGGTGAC GATCGACGGC GACACCTCGA CCTCGGACAC GCTGCTGGCG
TTCGCCACCG GCGCCGCCGC CAAGGCCGGC GCGCCGAAGA TTTCGCGCGC CTCCGATCCG
CGGCTGAAGG CGTTCGTCAA GGCGTTCAAT GCGGTGCTGG CCGATCTCGC CGAGCAGGTC
GCGCGCGACG GCGAGGGCGC CCGCAAGCTG GTCGAGATCA TCGTCGACGG CGCGAAAACG
CCGGCCTCGG CACGCAAGAT CGCGATGTCG ATCGCCAATT CGCCGCTGGT CAAGACCGCG
ATCGCCGGCG AGGACGCCAA TTGGGGCCGG GTGGTGATGG CGGTCGGCAA GGCCGGCGAG
CCGGCCGATC GCGACAAGCT TTCGATTTCG TTCAACGGCA TTCGCGTGGC GAAGAGCGGC
GCGCGCGATC CGTCCTACAA CGAGGCCGAA GTCTCGGCCG CGATGAAGAA GCCGGAAATC
CAGATCAAGG TCAGCCTCGG CCTCGGCAAG GGGCGGGATC GCGTGCTGAC CTGCGACCTC
ACCAAGGCTT ACGTCGAGAT CAACGGCGAC TATCGGTCGT GA
 
Protein sequence
MSSSVSPLAP TNVPTLPDLA GVRLATAAAG IRYKGRTDVL LVALDPGTAV AGVFTKSKCP 
SAPVEWCRDK LKGGSARVLV VNSGNANAFT GKTGRQATTL TASIASKAIG CKPAEVFLAS
TGVIGEPLDA TKFDGVLGKL AETAQPGGWM EAARAIMTTD TFPKVATATV KIGKTKVTIN
GMAKGAGMIA PDMATMLSFV FTDAPLSASC LQALLKAGVA DTFNAVTIDG DTSTSDTLLA
FATGAAAKAG APKISRASDP RLKAFVKAFN AVLADLAEQV ARDGEGARKL VEIIVDGAKT
PASARKIAMS IANSPLVKTA IAGEDANWGR VVMAVGKAGE PADRDKLSIS FNGIRVAKSG
ARDPSYNEAE VSAAMKKPEI QIKVSLGLGK GRDRVLTCDL TKAYVEINGD YRS