Gene RPD_0087 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0087 
Symbol 
ID4020542 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp101648 
End bp103522 
Gene Length1875 bp 
Protein Length624 aa 
Translation table11 
GC content68% 
IMG OID637960264 
ProductDNA polymerase III subunits gamma and tau 
Protein accessionYP_567228 
Protein GI91974569 
COG category[L] Replication, recombination and repair 
COG ID[COG2812] DNA polymerase III, gamma/tau subunits 
TIGRFAM ID[TIGR02397] DNA polymerase III, subunit gamma and tau 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.818033 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0455941 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGATT CCGGCCCTCC CGCGATCCCT TCAGGCGATT CGGAACAGAC CGGCCTCGGT 
TTGGGCGCAG CTCCGGCCGG CGCCTATCGG GTGCTGGCGC GCAAATACCG TCCCAACAGC
TTCGAGGATC TGATCGGCCA GGAAGCGGTG GTGCGCACCG TCTCCAACGC CTTCGACACC
GGGCGGATTC CGCAGGCCTG GATCCTGACC GGCGTGCGCG GCGTCGGCAA GACCACCACT
GCGCGCATCC TGGCGCGAGC ATTGAATTAC GAGATGCCGG ACGGCTCGGT GAAGGGGCCG
ACCATCCACA TGCCGGTGCA TGGCGTGCAT TGCAAAGCCA TCATGGAAAG CCGGCACATG
GATGTGCTGG AAATGGACGC CGCCTCGCAT ACCGGCGTCG ACGACGTCCG CCAGATCAAC
GACAGCGTCC GCTATGCGCC TGCCAGCGCG CGCTACAAAG TCTACATCAT CGACGAAGTC
CACATGCTGT CGACGGCGGC GTTCAACGCC TTCCTGAAGA CGCTGGAGGA GCCGCCGGAG
CACGCCAAAT TCGTGTTCGC TACCACCGAA ATCCGCAAGG TGCCGGTGAC GGTGCTGTCG
CGATGCCAGC GCTTCGATCT GCGCCGCGTC GAGGCCGATG TGCTGATGAA ACACCTCGCC
GGCATCGCCG CGAAGGAAGG CGTCGAGGTC GAGCCCGAAG CGCTCGGCAT CATCGCCCGC
GCCGCCGAAG GCTCCGTGCG CGATTCGCTG TCGCTGTTCG ATCAGGCAAT CGCCCATGCG
GCGGGGCTCG TGCGCGCCGA TCAGGTTCGG CAGATGCTCG GCCTCGCCGA CCGCACAAGG
GTGATCGAAT TGTTCGACGC TCTGGCGCGC GGCGATATCG CCAGCGCCTT CCAGGAATTT
CGCGATCAAT ACGACACCGG CGCCGATCCG GTGGTGGTGC TCAGCGATCT TGCCGAGTTC
GTCAATTTCG TCACCCGCGT GAAGATCGTG CCGGCGACCG CCGACAATGT CGCGTTCGGC
GAGACCGAGC GGCTGCGCGG GCGCGATTTC GCCGCCAAGC TGTCGATGCG GGTGCTGTCG
CGAATGTGGC AGATGCTGCT GAAGGGCATC GCTGAGGTGC AGGGCGCGAC GCGCCCCGCC
GCCGCCGCCG AAATGGTGCT GGTGCGGATC GCTTATGCCG CCGATCTGCC GACGCCGGAC
GAAGCCCTCC GGATGCTCGC GCAAGACGGC GGGAGCGCAA CGCCGCTGCC GTCCGGCGGA
GGCGCTGCAC CGCGCGGCGC ATCCTCGCCG CCGGTGTCCG CCGCATCCGT GGCTTCAGCC
TATGCGGCGC CCGCCGCAGC CGCGATGCCG CCGCGCAGCG CGCCGACGAT GGCGCGTGGC
GGCGCCGACA GCATGGCCCG GCCGCAGATC AGCGCGCCCG CCGCTGCTCC GCAGCAGGAC
GCCGCGCTGA AGATCACGAC CTTCCCGCAG CTCGTCGCAT TGGCGTCCGA GAAGCGCGAC
GTGATGACCC GTATGGCGCT GGAGGCCGAC GTCCGGCTGG TGCGGATCGA CGATGGACGG
CTCGAACTGG CGCTGGAGCG GACCGCGTCG CGCAGCCTGA TCAACGACCT CGGCCGCAAG
CTCGAACAAT GGACCGGCCG GCGCTGGACC GTGATCGTGT CGAACGAGCC CGGCCAGCCG
ACCTTGCGGT CGCAGAGCGA GGCGCAAAAG AACGAACGCG AACGCGCCGC GGAAAGCGAT
CCGCGGGTGC GTGAAGTGCT GGCGAAATTT CCTGGCGCCA AATTCGAGGT GCGGCGGCTC
GCCACCGACT TGGCCGAAGC CGATGCCGGG ATCGAAGACC CGGCCGAGCC GGTCGACGAC
GACGACGAAT CCTAG
 
Protein sequence
MTDSGPPAIP SGDSEQTGLG LGAAPAGAYR VLARKYRPNS FEDLIGQEAV VRTVSNAFDT 
GRIPQAWILT GVRGVGKTTT ARILARALNY EMPDGSVKGP TIHMPVHGVH CKAIMESRHM
DVLEMDAASH TGVDDVRQIN DSVRYAPASA RYKVYIIDEV HMLSTAAFNA FLKTLEEPPE
HAKFVFATTE IRKVPVTVLS RCQRFDLRRV EADVLMKHLA GIAAKEGVEV EPEALGIIAR
AAEGSVRDSL SLFDQAIAHA AGLVRADQVR QMLGLADRTR VIELFDALAR GDIASAFQEF
RDQYDTGADP VVVLSDLAEF VNFVTRVKIV PATADNVAFG ETERLRGRDF AAKLSMRVLS
RMWQMLLKGI AEVQGATRPA AAAEMVLVRI AYAADLPTPD EALRMLAQDG GSATPLPSGG
GAAPRGASSP PVSAASVASA YAAPAAAAMP PRSAPTMARG GADSMARPQI SAPAAAPQQD
AALKITTFPQ LVALASEKRD VMTRMALEAD VRLVRIDDGR LELALERTAS RSLINDLGRK
LEQWTGRRWT VIVSNEPGQP TLRSQSEAQK NERERAAESD PRVREVLAKF PGAKFEVRRL
ATDLAEADAG IEDPAEPVDD DDES