Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_0087 |
Symbol | |
ID | 4020542 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 101648 |
End bp | 103522 |
Gene Length | 1875 bp |
Protein Length | 624 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637960264 |
Product | DNA polymerase III subunits gamma and tau |
Protein accession | YP_567228 |
Protein GI | 91974569 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2812] DNA polymerase III, gamma/tau subunits |
TIGRFAM ID | [TIGR02397] DNA polymerase III, subunit gamma and tau |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.818033 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0455941 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCGATT CCGGCCCTCC CGCGATCCCT TCAGGCGATT CGGAACAGAC CGGCCTCGGT TTGGGCGCAG CTCCGGCCGG CGCCTATCGG GTGCTGGCGC GCAAATACCG TCCCAACAGC TTCGAGGATC TGATCGGCCA GGAAGCGGTG GTGCGCACCG TCTCCAACGC CTTCGACACC GGGCGGATTC CGCAGGCCTG GATCCTGACC GGCGTGCGCG GCGTCGGCAA GACCACCACT GCGCGCATCC TGGCGCGAGC ATTGAATTAC GAGATGCCGG ACGGCTCGGT GAAGGGGCCG ACCATCCACA TGCCGGTGCA TGGCGTGCAT TGCAAAGCCA TCATGGAAAG CCGGCACATG GATGTGCTGG AAATGGACGC CGCCTCGCAT ACCGGCGTCG ACGACGTCCG CCAGATCAAC GACAGCGTCC GCTATGCGCC TGCCAGCGCG CGCTACAAAG TCTACATCAT CGACGAAGTC CACATGCTGT CGACGGCGGC GTTCAACGCC TTCCTGAAGA CGCTGGAGGA GCCGCCGGAG CACGCCAAAT TCGTGTTCGC TACCACCGAA ATCCGCAAGG TGCCGGTGAC GGTGCTGTCG CGATGCCAGC GCTTCGATCT GCGCCGCGTC GAGGCCGATG TGCTGATGAA ACACCTCGCC GGCATCGCCG CGAAGGAAGG CGTCGAGGTC GAGCCCGAAG CGCTCGGCAT CATCGCCCGC GCCGCCGAAG GCTCCGTGCG CGATTCGCTG TCGCTGTTCG ATCAGGCAAT CGCCCATGCG GCGGGGCTCG TGCGCGCCGA TCAGGTTCGG CAGATGCTCG GCCTCGCCGA CCGCACAAGG GTGATCGAAT TGTTCGACGC TCTGGCGCGC GGCGATATCG CCAGCGCCTT CCAGGAATTT CGCGATCAAT ACGACACCGG CGCCGATCCG GTGGTGGTGC TCAGCGATCT TGCCGAGTTC GTCAATTTCG TCACCCGCGT GAAGATCGTG CCGGCGACCG CCGACAATGT CGCGTTCGGC GAGACCGAGC GGCTGCGCGG GCGCGATTTC GCCGCCAAGC TGTCGATGCG GGTGCTGTCG CGAATGTGGC AGATGCTGCT GAAGGGCATC GCTGAGGTGC AGGGCGCGAC GCGCCCCGCC GCCGCCGCCG AAATGGTGCT GGTGCGGATC GCTTATGCCG CCGATCTGCC GACGCCGGAC GAAGCCCTCC GGATGCTCGC GCAAGACGGC GGGAGCGCAA CGCCGCTGCC GTCCGGCGGA GGCGCTGCAC CGCGCGGCGC ATCCTCGCCG CCGGTGTCCG CCGCATCCGT GGCTTCAGCC TATGCGGCGC CCGCCGCAGC CGCGATGCCG CCGCGCAGCG CGCCGACGAT GGCGCGTGGC GGCGCCGACA GCATGGCCCG GCCGCAGATC AGCGCGCCCG CCGCTGCTCC GCAGCAGGAC GCCGCGCTGA AGATCACGAC CTTCCCGCAG CTCGTCGCAT TGGCGTCCGA GAAGCGCGAC GTGATGACCC GTATGGCGCT GGAGGCCGAC GTCCGGCTGG TGCGGATCGA CGATGGACGG CTCGAACTGG CGCTGGAGCG GACCGCGTCG CGCAGCCTGA TCAACGACCT CGGCCGCAAG CTCGAACAAT GGACCGGCCG GCGCTGGACC GTGATCGTGT CGAACGAGCC CGGCCAGCCG ACCTTGCGGT CGCAGAGCGA GGCGCAAAAG AACGAACGCG AACGCGCCGC GGAAAGCGAT CCGCGGGTGC GTGAAGTGCT GGCGAAATTT CCTGGCGCCA AATTCGAGGT GCGGCGGCTC GCCACCGACT TGGCCGAAGC CGATGCCGGG ATCGAAGACC CGGCCGAGCC GGTCGACGAC GACGACGAAT CCTAG
|
Protein sequence | MTDSGPPAIP SGDSEQTGLG LGAAPAGAYR VLARKYRPNS FEDLIGQEAV VRTVSNAFDT GRIPQAWILT GVRGVGKTTT ARILARALNY EMPDGSVKGP TIHMPVHGVH CKAIMESRHM DVLEMDAASH TGVDDVRQIN DSVRYAPASA RYKVYIIDEV HMLSTAAFNA FLKTLEEPPE HAKFVFATTE IRKVPVTVLS RCQRFDLRRV EADVLMKHLA GIAAKEGVEV EPEALGIIAR AAEGSVRDSL SLFDQAIAHA AGLVRADQVR QMLGLADRTR VIELFDALAR GDIASAFQEF RDQYDTGADP VVVLSDLAEF VNFVTRVKIV PATADNVAFG ETERLRGRDF AAKLSMRVLS RMWQMLLKGI AEVQGATRPA AAAEMVLVRI AYAADLPTPD EALRMLAQDG GSATPLPSGG GAAPRGASSP PVSAASVASA YAAPAAAAMP PRSAPTMARG GADSMARPQI SAPAAAPQQD AALKITTFPQ LVALASEKRD VMTRMALEAD VRLVRIDDGR LELALERTAS RSLINDLGRK LEQWTGRRWT VIVSNEPGQP TLRSQSEAQK NERERAAESD PRVREVLAKF PGAKFEVRRL ATDLAEADAG IEDPAEPVDD DDES
|
| |