Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_0075 |
Symbol | dapD |
ID | 4020530 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 90762 |
End bp | 91607 |
Gene Length | 846 bp |
Protein Length | 281 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637960252 |
Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
Protein accession | YP_567216 |
Protein GI | 91974557 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0131794 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGCTCT CCGCCCTGGA AAACACCATC AATACTGCTT TCGACGCGCG CGACACGATC AGCGCCGCGA CCAAGGGCGA GGTCCGTGAC GCGGTCGATC AGGCGCTCGA CCTGCTCGAC CGGGGCGAGG CCCGCGTTGC CGAGCGTGAC GCGTCGGGGA CCTGGACGGT CAATCAGTGG CTGAAGAAGG CGGTGTTGCT GTCGTTCCGG CTGAACGACA TGCACACCAT CGCGGGCGGC CCCGGCGGCG CGACCTGGTG GGACAAGGTG CCGTCGAAAT TCGAGGGCTG GGGCGAGAGC CGGTTTCGCG AAGCCGGCTT CCGCGCCGTG CCCGGCGCGA TCGTGCGCCG CTCCGCCTTC ATCGCCAAGA ACGCGGTGCT GATGCCGTCC TTCGTCAATC TCGGCGCCTA TGTCGACGAG GCCACGATGG TCGACACCTG GTCGACGGTC GGCTCCTGCG CCCAGATCGG CAAGCGCGTG CACATCTCCG GCGGCGTCGG CATCGGCGGC GTGCTGGAGC CGCTGCAGGC CGGACCGGTG ATCATCGAGG ACGACTGCTT CATCGGCGCG CGCTCCGAAG TCGCCGAGGG CGTGATCGTG CGCCGTGGCG CGGTGCTGGC GATGGGCGTG TTCCTCGGCG CCTCGACCAA GATCGTCGAC CGCGAGACCG GCGAGGTCTT CATCGGCGAA GTTCCGGAAT ACGCCGTGCT GGTGCCGGGC GCATTGCCGG GCAAGCCGCT GAAGAACGGC ACGCCGGGCC CCTCGACCGC CTGCGCGGTG ATCGTCAAGC GCGTCGACGA ACGCACCCGC TCAAAGACGA GCATCAACGA GTTGTTGCGG GACTGA
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Protein sequence | MSLSALENTI NTAFDARDTI SAATKGEVRD AVDQALDLLD RGEARVAERD ASGTWTVNQW LKKAVLLSFR LNDMHTIAGG PGGATWWDKV PSKFEGWGES RFREAGFRAV PGAIVRRSAF IAKNAVLMPS FVNLGAYVDE ATMVDTWSTV GSCAQIGKRV HISGGVGIGG VLEPLQAGPV IIEDDCFIGA RSEVAEGVIV RRGAVLAMGV FLGASTKIVD RETGEVFIGE VPEYAVLVPG ALPGKPLKNG TPGPSTACAV IVKRVDERTR SKTSINELLR D
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