Gene RPD_0075 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0075 
SymboldapD 
ID4020530 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp90762 
End bp91607 
Gene Length846 bp 
Protein Length281 aa 
Translation table11 
GC content68% 
IMG OID637960252 
Product2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 
Protein accessionYP_567216 
Protein GI91974557 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2171] Tetrahydrodipicolinate N-succinyltransferase 
TIGRFAM ID[TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0131794 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCTCT CCGCCCTGGA AAACACCATC AATACTGCTT TCGACGCGCG CGACACGATC 
AGCGCCGCGA CCAAGGGCGA GGTCCGTGAC GCGGTCGATC AGGCGCTCGA CCTGCTCGAC
CGGGGCGAGG CCCGCGTTGC CGAGCGTGAC GCGTCGGGGA CCTGGACGGT CAATCAGTGG
CTGAAGAAGG CGGTGTTGCT GTCGTTCCGG CTGAACGACA TGCACACCAT CGCGGGCGGC
CCCGGCGGCG CGACCTGGTG GGACAAGGTG CCGTCGAAAT TCGAGGGCTG GGGCGAGAGC
CGGTTTCGCG AAGCCGGCTT CCGCGCCGTG CCCGGCGCGA TCGTGCGCCG CTCCGCCTTC
ATCGCCAAGA ACGCGGTGCT GATGCCGTCC TTCGTCAATC TCGGCGCCTA TGTCGACGAG
GCCACGATGG TCGACACCTG GTCGACGGTC GGCTCCTGCG CCCAGATCGG CAAGCGCGTG
CACATCTCCG GCGGCGTCGG CATCGGCGGC GTGCTGGAGC CGCTGCAGGC CGGACCGGTG
ATCATCGAGG ACGACTGCTT CATCGGCGCG CGCTCCGAAG TCGCCGAGGG CGTGATCGTG
CGCCGTGGCG CGGTGCTGGC GATGGGCGTG TTCCTCGGCG CCTCGACCAA GATCGTCGAC
CGCGAGACCG GCGAGGTCTT CATCGGCGAA GTTCCGGAAT ACGCCGTGCT GGTGCCGGGC
GCATTGCCGG GCAAGCCGCT GAAGAACGGC ACGCCGGGCC CCTCGACCGC CTGCGCGGTG
ATCGTCAAGC GCGTCGACGA ACGCACCCGC TCAAAGACGA GCATCAACGA GTTGTTGCGG
GACTGA
 
Protein sequence
MSLSALENTI NTAFDARDTI SAATKGEVRD AVDQALDLLD RGEARVAERD ASGTWTVNQW 
LKKAVLLSFR LNDMHTIAGG PGGATWWDKV PSKFEGWGES RFREAGFRAV PGAIVRRSAF
IAKNAVLMPS FVNLGAYVDE ATMVDTWSTV GSCAQIGKRV HISGGVGIGG VLEPLQAGPV
IIEDDCFIGA RSEVAEGVIV RRGAVLAMGV FLGASTKIVD RETGEVFIGE VPEYAVLVPG
ALPGKPLKNG TPGPSTACAV IVKRVDERTR SKTSINELLR D