Gene RPD_0069 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0069 
Symbol 
ID4020524 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp84531 
End bp86396 
Gene Length1866 bp 
Protein Length621 aa 
Translation table11 
GC content63% 
IMG OID637960246 
Productputative inner membrane protein translocase component YidC 
Protein accessionYP_567210 
Protein GI91974551 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0706] Preprotein translocase subunit YidC 
TIGRFAM ID[TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.090165 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00200731 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGACCGACA ATCGCAACAC CATCCTCGCC GTGATTCTGT CGGGCCTCGT GTTGCTCGGC 
TGGCAGTACT TCTTCAACAT CCCGCAGATG GAGAAGCAGC GCGCCGCACA GCAGGCGCAG
CAGCAGCAAG AGGCTGCCAA GCAGCAGACC CCGCCGGCGG CCACGACTCC CGGCGCGCCG
AATGCTCCGG CGGCTCCGGG TGCTCCGGGC GCGCCTGCCA ACCAGCCGGC CGCCAATGCG
CCGGTGGTCA GCCGTGACGC CGCGATTGCG GCCTCGCCGC GGATCAAGGT CGAGACCCCG
CGGCTCGACG GCACGCTGTC GCTGAAGGGC GCGCGGATCG ACGATCTGTC GCTGAGCCAG
TACCACGAAA CCGTCGATCC GAAGTCGGCG CCGATCCATC TGTTCTCGCC GTCCGGCAGC
GCCAATCCCT ACTACGCCGA GTTCGGCTGG GTCGGCGCCG CGGGCTCGAA CGTCAAGCTG
CCCGACCAGA ACACGCTGTG GGAGCAGGAA GGCAGCGGCG CGCTGACGCC GGCCAATCCG
GTAACGCTGA AATGGGACAA CGGCGAGGGC CTCACCTTCC GCCGCCAGAT CGCGGTCGAC
GATCGCTACT TGTTCACGAT CAAGGACGAC GTCACCAATG TCGGCGGCGG CCCGGTGACG
TTGTATCCGT TCGCGCTGAT CTCGCGCCAC GGCACCCCGC ATGTCGAAGG CTTCTACATC
CTGCATGAAG GCCTGATCGG CTATCTCGGC GAGCAGGGTC TGCAGGAATA CGGCTACGCC
AAGATCGACG AAGCCAAGAC GGTCGGTTTC AAGGCCACCA ACGCCTGGAT GGGCATCACC
GACAAATACT GGGCGTCGGC GCTGCTGCCC GACACCAATG CGCAGCTTCA GGCGCGGTTC
TCTTCGAACC AGGTCGGCGC CACCCGGACC TACCAGACCG ACTATCTCGA AGACGCCAAG
ACCGTTCCGA TTGGCGGCAC CGCCACCGCG ACCGCGCGGC TGTTCGCGGG CGCCAAGGAA
GCGCGCGTCG TCGGCATCAA CTTCCCGTTC GCGGGGCTCG GCGGCTACAA CCAGCAGCTC
GGGCTGAACC ATTTCGACCT GCTGATCGAC TGGGGCTGGT TCTACTTCAT CACCAAGCCG
ATGTTCCTCG CGCTCGACTT CTTCTTCCAC CTGGTCGGGA ATTTCGGCGT CGCCATTCTG
CTGGTGACGG TACTGGTCAA GCTGATCTTC CTGCCGCTGG CGAACAAGTC CTACGCCTCG
ATGGCGAAGA TGAAAGCGAT CCAGCCGCAA TTGCTTGCGC TGAAAGAGCG TCATCCGGAC
GACAAGGCGA AGCAGCAGCA GGAGATGATG GAGATCTACC GCAAGGAGAA GATCAATCCG
GTCGCCGGCT GTCTGCCGGT GCTGCTGCAG ATCCCGGTGT TCTTCTCGCT GTACAAGGTG
TTGTTCGTCA CCATCGAAAT GCGGCACGCG CCGTTCTTCG GCTGGATCCA CGACCTCTCG
GCGGCCGATC CGACCAACCT GTTCAATCTG TTCGGTCTGA TTCCCTATGA TCCAAGCACG
CTGCCGGTTA TCGGGTCGTA TCTGGTGCTC GGCGTCTGGC CGCTGGTGAT GGGCTTCACG
ATGTGGTTCC AGATGAAGCT CAACCCGCAG CCGCCGGATC CGACGCAGCA GATGATCTTC
GCCTGGATGC CGGTGATCTT CACCTTCATG CTGGCGCACT TCCCGGCGGG TCTCGTGATC
TACTGGGCCT GGAACAACAC GCTCTCGGTG ATCCAGCAGG CCTACATCAT GCGCCGCAAC
GGCGTGAAGG TGGAGCTGTG GGACAATCTG AAATCCGCCG TCGTCAAACC AAAGAAGACG
GCCTGA
 
Protein sequence
MTDNRNTILA VILSGLVLLG WQYFFNIPQM EKQRAAQQAQ QQQEAAKQQT PPAATTPGAP 
NAPAAPGAPG APANQPAANA PVVSRDAAIA ASPRIKVETP RLDGTLSLKG ARIDDLSLSQ
YHETVDPKSA PIHLFSPSGS ANPYYAEFGW VGAAGSNVKL PDQNTLWEQE GSGALTPANP
VTLKWDNGEG LTFRRQIAVD DRYLFTIKDD VTNVGGGPVT LYPFALISRH GTPHVEGFYI
LHEGLIGYLG EQGLQEYGYA KIDEAKTVGF KATNAWMGIT DKYWASALLP DTNAQLQARF
SSNQVGATRT YQTDYLEDAK TVPIGGTATA TARLFAGAKE ARVVGINFPF AGLGGYNQQL
GLNHFDLLID WGWFYFITKP MFLALDFFFH LVGNFGVAIL LVTVLVKLIF LPLANKSYAS
MAKMKAIQPQ LLALKERHPD DKAKQQQEMM EIYRKEKINP VAGCLPVLLQ IPVFFSLYKV
LFVTIEMRHA PFFGWIHDLS AADPTNLFNL FGLIPYDPST LPVIGSYLVL GVWPLVMGFT
MWFQMKLNPQ PPDPTQQMIF AWMPVIFTFM LAHFPAGLVI YWAWNNTLSV IQQAYIMRRN
GVKVELWDNL KSAVVKPKKT A