Gene RPD_0043 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0043 
Symbol 
ID4020497 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp55237 
End bp55872 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content63% 
IMG OID637960219 
Productregulatory protein, TetR 
Protein accessionYP_567184 
Protein GI91974525 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGCGA AAAGCCGACG CACCCGCACC GCATCGCAAA CCCGACAGGC CAAACCGGCC 
CGGGAGAACC GCGCGGCCGA CAAGCGGCCG GCGCTTTCTG GCGATCGTCG ACAAGCGCTG
ATCAGCGAGG CGGCACGGCT GTTCGGCAAC AAGGGCTATG AAAACACGTC GATGCGCGAC
ATCGCCGCAG CGGTCGGCAT CCTGCCGGGA TCGCTCTATC ATCACTTTTC TTCCAAGGAA
GAGTTGTTCG TCGCCGTCTA TTCCTTCGCC GTGTCGCAAT CAGTCGACGC TGTGACGGCA
GCGATCGAGC CCCGATCCGC CCCTTGGATT CGCCTGGAAG CGGCTTGCAT CGCACACATG
CAAAGCCTGC TCGACAAAAG CCGATTCGCC GCGGTTCTGG TCTCGCACCT ATCGGTGTCT
GGCCTGCCAG AACAGGTTGT CGCGCTTCGC GACAGCTACG AAGCCGTCTT CAAGGATCTG
ATCGCAGAGC TGCCGCTGCC GGCAGGAACC GATCGGCGCA TCTTCAGACT TGGACTGCTG
GGGTCGATGA ACTGGGCGAT CACTTGGTAC CGCCCCGGCG GCGAGACGCC GGCGAGTATC
GCCCGGAAGC TCCTGAATGC GATCCGGCGC GATTAG
 
Protein sequence
MIAKSRRTRT ASQTRQAKPA RENRAADKRP ALSGDRRQAL ISEAARLFGN KGYENTSMRD 
IAAAVGILPG SLYHHFSSKE ELFVAVYSFA VSQSVDAVTA AIEPRSAPWI RLEAACIAHM
QSLLDKSRFA AVLVSHLSVS GLPEQVVALR DSYEAVFKDL IAELPLPAGT DRRIFRLGLL
GSMNWAITWY RPGGETPASI ARKLLNAIRR D