| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbur_1987 |
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| Symbol | secD |
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| ID | 3996939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanococcoides burtonii DSM 6242 |
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| Kingdom | Archaea |
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| Replicon accession | NC_007955 |
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| Strand | + |
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| Start bp | 2087889 |
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| End bp | 2089583 |
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| Gene Length | 1695 bp |
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| Protein Length | 564 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637959728 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_566616 |
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| Protein GI | 91773924 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.000381338 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAGAAG AGGAAGTTCC AAAAGGATTG AAGAATGATA TGCGTGTCTG GTTACTGATC
GCAGCTGTAG TTCTCTCCGT TGTGATGATA GGTCCTGGTT ATTCTGCTGA AGAGGGTCTG
AACACCGATC TTAATTATGG TCTTGATCTT GAAGGTGGTT CCTGGATACA GATCAAGTTG
CAGGGTGCTG TTACTCAACT GGATGCCGAC ATCTCAATGC TGGTGACGGA AATTGTGGAG
TCTGCGATCG ATGCCCCTAT TCATATCATA AGTGTTACGG GGAATACCGG TGAGGGTTAT
TCCAATGCTG GTAATACTGT CACGTTCACG ACCAGTGCAT ATGTCTCTGA CCTTCAGATA
GATCTTTTAG GTCTCGGGGA GTCCGACATC TCATACTCTG ATGATATAAG TAATATTGTG
CTTTTCACGG ACAAACAAAC CCTTATCATG CAATACCTTT CCAAAGCTCT CAATACTGAG
GTCGTTCCTC TTTTTATTGG GGATGATGTT GAGTACGAGA TACGTACCGG TGTCTCTCTG
GAAGAATTGC AGGCATTGAT GGTTCCGGTT GGAGGCAATG TTCTTACGGG AAGTGACGGG
GATGCGATAT TCAGGGAAGG GGTCAGGACC GAGACACGGG ACATGACCCG TGATATCCTT
AGTGAAAAAC TGAACTCACT TGGTCTTAAG GATATACCTG TGCGTACTGT TGGTGATGAG
TATATACTGA TCGATTTCGC AGGTACTGAT CTCACTACTG CAAAGGACAT AGTCGAGAAA
CCAGGTAAGT TCGAGATACG CATGCAAACC ACTGGAAATG AAAGTGTGCA TGTGCTCTAT
GGTGATTCTA TCGAAAAAGT GGGTATCGTT ACCCAGATGG ATGGTTACTG GAACACTCCT
TTCACTCTTG ATGAAGATGG TGCTTTTGCT TTGCAAAAGA TCGCGATCGA GTCAGGTGCT
ATCAATGATC CGAATTCACA TCTGCTCTAC ATGTATCTGG ATGACAGGGA GGTATATGGT
GCACCATTGA GCTATTCCGC GGCTTCAACA CTGAACGAAC ATCCTATTTA TTCATGGCAG
GCTTCTACAG GTGCCGATGA GGATGGTAAA ACACAGGCTG AACAGCTTCA GATACATTTA
CGTGCAGGTG CGTTGCCTGT GAACGTTGTG CTTATGGGCT CCGGTCAGGT TGATGCTGCA
TTGGGTGCCC AGTTCAAGAG GCAGGTGGCT TTAGCAGGAC TTTTCGCATT GTTAGCAGTG
GCTGCAGTGG TGTTCAGGCG ATACCATCAA AAGGAGATCC TGTTGCCGAT GGTAGGTACT
TCGATCTGTG AGGTCATAAT GATACTCGGA TTTGCTGGTG CTGTTAACTG GCAGCTCGAC
CTTGCGGCGA TAGCTGGTAT TATTGCGGCT ATAGGTACAG GTATCGACCA TCTTGTGATA
ATCACTGATG AAGTTCTGTA TGAAGGCAAG CTTCCATCCA CCAAGGTCTA TATGGAAAGG
ATCACTAAGG CATTTGCTAT TATATTTGCA GCTGCAGCAA CGACTATGAT CGCGATGTCA
CCTCTGGTGA TCATGGGATT CGGTGCTCTC AGGGGATTTG CCATCACCAC AATAGTTGGT
GTGCTTATCG GTGTGCTTAT TGCAAGACCT GTATATGGTA AAGTGATCAA AGTGGTCCTT
GACAAAGCAG AATGA
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| Protein sequence | MREEEVPKGL KNDMRVWLLI AAVVLSVVMI GPGYSAEEGL NTDLNYGLDL EGGSWIQIKL
QGAVTQLDAD ISMLVTEIVE SAIDAPIHII SVTGNTGEGY SNAGNTVTFT TSAYVSDLQI
DLLGLGESDI SYSDDISNIV LFTDKQTLIM QYLSKALNTE VVPLFIGDDV EYEIRTGVSL
EELQALMVPV GGNVLTGSDG DAIFREGVRT ETRDMTRDIL SEKLNSLGLK DIPVRTVGDE
YILIDFAGTD LTTAKDIVEK PGKFEIRMQT TGNESVHVLY GDSIEKVGIV TQMDGYWNTP
FTLDEDGAFA LQKIAIESGA INDPNSHLLY MYLDDREVYG APLSYSAAST LNEHPIYSWQ
ASTGADEDGK TQAEQLQIHL RAGALPVNVV LMGSGQVDAA LGAQFKRQVA LAGLFALLAV
AAVVFRRYHQ KEILLPMVGT SICEVIMILG FAGAVNWQLD LAAIAGIIAA IGTGIDHLVI
ITDEVLYEGK LPSTKVYMER ITKAFAIIFA AAATTMIAMS PLVIMGFGAL RGFAITTIVG
VLIGVLIARP VYGKVIKVVL DKAE
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