| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbur_0028 |
|---|
| Symbol | |
|---|
| ID | 3996891 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcoides burtonii DSM 6242 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007955 |
|---|
| Strand | + |
|---|
| Start bp | 15375 |
|---|
| End bp | 16370 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637957870 |
|---|
| Product | H/ACA RNA-protein complex component Cbf5p |
|---|
| Protein accession | YP_564802 |
|---|
| Protein GI | 91772110 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00425] rRNA pseudouridine synthase, putative
[TIGR00431] tRNA pseudouridine 55 synthase
[TIGR00451] uncharacterized domain 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.000488795 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTCAT CTAAACGTTC TCCCAAAGAT GTTAATATTA TGGTGGAAAA ATTTCACGCA
ACTACCAATG CAGCATATGG TTGTCTTCCT CAGGACCGAC CGATCCTTGA GTATATTAAT
ATGGGTGTTG TGAACATCGA TAAGGCAATA GGCCCAACCA GTCACGAGGT CACAGCATGG
GTAAGGGATA TGCTCGGTGT GAAAAAAGCA GGACATTCCG GATCACTTGA TCCGCATGTA
ACTGGTCTGC TTCCCGTGAT GCTTGGCAGG GCAACAAAAG CGGTCTCAGC TCTGCGTCTT
TCCGGAAAAG AGTACATTTG TGTTATGCAT TTGCATGATG ACATCCCTGA TAGGAAGATC
CGAAAAGCAT GCAAGGAATT CACAGGTCCT ATCTACCAGA CCCCTCCAAT TATCTCTGCT
GTCAAAAGGC AATTGAGGAT CAGGAACATC TATTATCTGG ATGTCCTTGA GATCGAAGGT
AGGGAAGTGC TCATGAGAGT GGGTTGTGAG GCAGGGACAT ATCTTCGCAA ACTCTGTCAT
GACATCGGCC TTGTCCTTGG TTGTGGCGGT CACATGAAGC AGCTTCGAAG AACCGGAACG
GGTCCGTTCA GGGAGGATAC GCTTGTATCA CTATATGACC TCAAGGATGC ATGCGTGTTC
TGGCAGGAAG ATGGCGATGA GTCTGAACTA CGCAAATTGG TACGTCCAAT GGAAGAAGGT
CTGTCCCATC TGCCGAAGAT CATCATTCGT GATAGTGCTG TAGATGCTGT TTGCAGGGGT
GCTTCCCTTG CAGTTCCCGG TATCGTTTCA TTCAGTAAAT GCATCCAAAA AGATGACAAA
ATTGCCGTTT TCACTCTAAA AGGAGAAGCT GTGGCACTTT GCAGGTCATT CATGAATGCA
GATGAACTTG AAAATGAAAG TCACGGCATA GCCTGTATTA CCGAAAGGGT AATAATGGAT
GCCGCTATTT ATCCAAGGTG CTGGAAGGCG AAATAA
|
|---|
| Protein sequence | MVSSKRSPKD VNIMVEKFHA TTNAAYGCLP QDRPILEYIN MGVVNIDKAI GPTSHEVTAW
VRDMLGVKKA GHSGSLDPHV TGLLPVMLGR ATKAVSALRL SGKEYICVMH LHDDIPDRKI
RKACKEFTGP IYQTPPIISA VKRQLRIRNI YYLDVLEIEG REVLMRVGCE AGTYLRKLCH
DIGLVLGCGG HMKQLRRTGT GPFREDTLVS LYDLKDACVF WQEDGDESEL RKLVRPMEEG
LSHLPKIIIR DSAVDAVCRG ASLAVPGIVS FSKCIQKDDK IAVFTLKGEA VALCRSFMNA
DELENESHGI ACITERVIMD AAIYPRCWKA K
|
|---|
| |