Gene Sden_3763 details

Gene Information

• Locus tag: Sden_3763
• ID: 4020325
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: -
• Start bp: 4529486
• End bp: 4531375
• Gene Length: 1890 bp
• Protein Length: 629 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 637957827
• Product: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
• Protein accession: YP_564759
• Protein GI: 91795108
• COG category: [D] Cell cycle control, cell division, chromosome partitioning
• COG ID: [COG0445] NAD/FAD-utilizing enzyme apparently involved in cell division
• TIGRFAM ID: [TIGR00136] glucose-inhibited division protein A

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.223421
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCATTTTC ACGAAAGGTT TGATGTTATT GTTGTAGGTG GTGGTCATGC CGGAACTGAA 
GCGGCATTAG CGTCTGCAAG AATGGGTTCG AAAACGTTAC TGCTCACTCA CAACATAGAT 
ACGTTAGGGC AAATGTCTTG TAACCCAGCG ATCGGTGGGA TTGGTAAGGG CCATTTAGTC 
AAAGAGATCG ATGCTTTAGG TGGTGCTATG GCAATAGCCA CTGATTTCGC AGGCATACAA 
TTTAGAACCT TAAATTCGAG CAAAGGCCCA GCAGTGCGTG CAACCCGGGC ACAAGCGGAT 
CGCGCCTTGT ATCGTCAAAA AATCCAGCAA ATTTTACAAA GCCAACCAAA CTTACGTATT 
TTCCAACAAG CCGTTGATGA CTTAGTTGTT GAAAATAATC AAGTGGTTGG TGTGGTAACC 
CAAATGGGAT TGGCCTTTGA ATCACCAACG GTAGTGTTAA CCACAGGCAC GTTCTTAAGC 
GGTAAAATTC ATATTGGCAT GCAAAACTAC AGTGGCGGCC GTGCTGGCGA TCCACCGGCA 
ATTGCTTTAG CCAATCGACT ACGTGAATTG CCTATTCGTG TTGGACGCTT AAAAACCGGT 
ACACCACCTC GAATCGATGC CAACAGCATA GATTTCTCAC AAATGACTGA GCAAAAAGGC 
GATACTCCTT TGCCTGTGAT GTCGTTCGTT GGCAATGTAG ATCAACATCC GCGACAAATT 
TCGTGTCACA TCACCCATAC CAACGAGAAA ACTCACGATA TCATTCGTGG TGGACTAGAC 
AGAAGTCCTA TGTATTCAGG GGTTATTGAA GGTATTGGTC CAAGATACTG TCCATCAATT 
GAAGATAAAA TCCATCGCTT CGCCGATAAG ACTTCTCATC AAATATTTAT CGAACCTGAA 
GGCTTAAGCA CCAACGAAAT CTACCCTAAT GGTATTTCGA CTAGCTTGCC ATTTGATGTG 
CAATTGAATT TAGTCCGTTC AATCAAAGGC ATGGAAAACG CTGAGATTAT TCGCCCAGGC 
TATGCCATTG AATACGATTA TTTTGATCCT AGAGATCTTA AAAACTCGTT AGAAACCAAA 
ACCATTAATG GTTTGTTCTT TGCAGGACAA ATTAACGGCA CCACGGGCTA TGAAGAAGCC 
GGTGCTCAAG GTTTATTAGC CGGTATGAAT GCCTCCTTGC AAGTGCAAGG CAAAGAGACT 
TGGTGTCCAC GTCGGGATCA AGCCTATTTA GGGGTATTGG TTGACGATCT ATCCACCCTA 
GGGACTAAAG AACCCTACCG CATGTTCACC AGCCGCGCCG AGTACCGTTT GCTGTTACGT 
GAAGATAATG CTGATTTACG ATTAACTGAA AAAGGCCGCG AACTTGGCTT AGTCAATGAT 
GATCGCTGGG CTAAATTTAC CGAAAAGCGA GAGTCTATTG AACTTGAGCT ACAACGTTTA 
CGTGGTCAGT GGATCCACCC CAACTCACCT TTACTTGGAG TATTAAATCC TGAATTAAAT 
ACCCCTATTT CTCGTGAAGC ATCTTTTGAA GACTTATTAC GTCGTCCTGA AATGGACTAT 
CAGAAATTAA TGTCGTTAGA AGGATTTGGT CCGGGTCTTG AAGATCCTAG TGCAGCAGAG 
CAAGTGCAGA TACAGGTTAA ATATTCAGGT TATATTCAGC GTCAACAAGA TGAAATTGAT 
AAGGCTATTC GCCATGAAAA CTCCTTGTTG CCGCTCGATC TGGATTATCA AGAAGTCCCA 
GGGCTCTCTA ATGAAGTGAT AGCAAAATTG AATAACCACA AGCCAGATAC CATAGGCCAA 
GCATCACGGA TCTCGGGTAT TACCCCAGCG GCAATTTCAA TTTTACTAGT TCACCTTAAA 
AAGCGCGGTT TGCTACGCAA AACTGCTTAA 

 

Protein sequence

MHFHERFDVI VVGGGHAGTE AALASARMGS KTLLLTHNID TLGQMSCNPA IGGIGKGHLV 
KEIDALGGAM AIATDFAGIQ FRTLNSSKGP AVRATRAQAD RALYRQKIQQ ILQSQPNLRI 
FQQAVDDLVV ENNQVVGVVT QMGLAFESPT VVLTTGTFLS GKIHIGMQNY SGGRAGDPPA 
IALANRLREL PIRVGRLKTG TPPRIDANSI DFSQMTEQKG DTPLPVMSFV GNVDQHPRQI 
SCHITHTNEK THDIIRGGLD RSPMYSGVIE GIGPRYCPSI EDKIHRFADK TSHQIFIEPE 
GLSTNEIYPN GISTSLPFDV QLNLVRSIKG MENAEIIRPG YAIEYDYFDP RDLKNSLETK 
TINGLFFAGQ INGTTGYEEA GAQGLLAGMN ASLQVQGKET WCPRRDQAYL GVLVDDLSTL 
GTKEPYRMFT SRAEYRLLLR EDNADLRLTE KGRELGLVND DRWAKFTEKR ESIELELQRL 
RGQWIHPNSP LLGVLNPELN TPISREASFE DLLRRPEMDY QKLMSLEGFG PGLEDPSAAE 
QVQIQVKYSG YIQRQQDEID KAIRHENSLL PLDLDYQEVP GLSNEVIAKL NNHKPDTIGQ 
ASRISGITPA AISILLVHLK KRGLLRKTA