| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3670 |
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| Symbol | |
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| ID | 4020227 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 4386539 |
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| End bp | 4388941 |
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| Gene Length | 2403 bp |
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| Protein Length | 800 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637957731 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_564668 |
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| Protein GI | 91795017 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTGAGT ACCTGTATGA AAAAAATATA CTGGGTGATC AGCTCACTGA CTCTATTTCT
AAGCAGTTAC AGCAAGATTT ATTTCGCATG CGCAGCGTGG TGGATTCGGC TATAGCGACT
CAAGATATGC AGCGTATAGA GCAAGAAGTG GAACTCGTGG CGACAGAGCA AGATATGATG
GTATATGTAC TGTTAGACGC CAATAGCCAA ATACATTTTG CCAATCATAC TATTTGGCGA
AACAGTAACG CGGCTCATGT ATTAGAGGCC TACTCTGCCA AGACACATCA CGAGGCGGTG
ACCCAGAATA GAGAAATAAT CCTGATTGAT TTTGAGAGTC TATCAATACA AGTCTATTAT
CCCGTTTTTT CCAGTAGTCG CTCTCGTTAC TCCAGTGCAG TGGATGTGAT TTATCTTGAA
TATAGCATTG CGATTATATT ATTTGAGGCC ATAGATAAGT TACAACAACG GCTAGAAACG
GTTTGGGGAG TAGGGTTTTT ATTCATTTTA TTGTTTTATT TCATTTTCTA TCGACTGCAC
ATCTCACCAC TGCGACGTCT GAGCCGAGCA GCAAAAAAAG TGGGTATGGT TAATTTTCAT
TCTGACTCTG CCTTTTGGTC GGCTGAATTG AGTGTCTTGC ATCATTATTT GACTGATGTT
GACGGTCGTT TAAAAAGGGC GACTAAACGC CTTAATGATG CAGAGCGCCG CTGGTTATTT
AGCGTCGAAG GCTCTCGAAA TGGCATCTGG GATTGGAATA TTGCCACTGG CGCCATTTTT
GTATCAGACA GATGGAAAGA GATCTTAGGT TTCGATGCCG GTGATTTAAC TAACGATTAT
TTGGCTTGGG AGTCAAGGTT GCATCCCGAT GAGAAGTCAC AGGTACTCAA TACACTACAA
AATTATATTA ATCATCAGAA AGAAGATTAT GAAAGTGTTC ATCGGCTAAA GCACAAGCAA
GGCCATTATA TTTGGGTGCT CGATAAGGGC AAGATTGTTG AGTGGGATGA ACAGTCCAGA
CCTATACGCA TTATTGGGAC TATTACAGAT GTCTCTGGTG ATGTGCAGCA TCATAGAGTT
GCCATAGATA AACAAAGCCA TAATGGCTTA ACCGATCTGA TCAATCGCGA TGGTTTGGCT
AATGCCCTAT TCGATTTACA AGTACAGTGT CGTCAAAGTG AAACGTCCGC AGCGTTAATT
TTGGTTAGTT TAGATAATTT CAGTGTGATT AATGATGCAT TAGGTCGTCA GCTTGGTGAT
AGATTACTGA TGCAAATTGC CGCGAGACTC ACCAGCACAT TTAGTGCAGT GGGCCTGATT
GCTCGGTTAG GCACGGATGA GTTTGTGATG CTGGCAGCCC ACTTAGGGCC AGATGCTGAG
CAAGCTAACC GTCGTGCATT AGCATTAGCA AGTGAAGTAA AGCAATTAAT CAGTAGAGGT
TTTACTGTCT CTGAGCAGCA TTTATCTATT TCTGCCAAGG TGGGGGTGGT GGTGTTTGAT
GGTATAGATT CTATCGAGCC TCATACTTTA CTGGCGCGGG CCGATACTGC GCTTAGCCAT
GCCAATGATG CCGCGGAGGG GTGTATCTTG TATCAAGCCT CAATGGATAA AAACCAACTG
CAGCCGGCTA AATTGCAACA AGCTTTGGCT GTAGCAATCG ATGCCGGGCA ACTCTCACTG
GCCTTTCAGC CTGTAGTTGA TGTGGATGGC AATTTGGGCA GTATTGAGGT GCTTATCCGT
TGGTATCATG TCGAATATGG TTTTATCGCC CCCACTAAAA TCATTGCAAC AGCAGAGCTC
AGTGAAGATA TCGTTAAATT GGAACTATGG GTATTCGAGC AAGTTTGCAG CCTGATATTA
GCACTCGAAC ATCAGCGGGT GAGTTCGCCG ATTTTCTCAA TCAATATTAG TGCTAGGTCG
TTCCATCAAG AAGGTTTTAT CCAGCAGCTT AAACAGAGAA TGCGTCAATT CCCAATTAAG
GGGACCCCAA TTCAACTCGA ATTGGCTGAA GAGGTATTTA ATGTTAATCC GCAAGCGGCT
AGAAAACTTG TGCGTGAGTT GCAGGAGTTG GGCTTCTTAA TTGCGCTAGA CAATTTTGGT
TTAAGCATGG GGACACTTCA ATATTTACAG GGTGTCAGCT TTTCACAGGT TAAATTGGCG
CCACGATATT TGGATGGCAT CACCGACAGC GCACAGAGCA CTAAGTTGTT AGCTGCCTTG
GTGAATATGG CAAGGGACTT GGGATATGCA GTAGTGGCAA AACACATTGA AAATAAAGAG
CTGCTTAAGA TCACGACCGA AATACATTGT ACTTGGTTTC AAGGCTACAT AATCAGCCGC
CCCTTGGTGG AGAAAGACAT ATTGCAGCTA ATTAAGTCTA AATTATCTCT GAGTGTTGGT
TAA
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| Protein sequence | MGEYLYEKNI LGDQLTDSIS KQLQQDLFRM RSVVDSAIAT QDMQRIEQEV ELVATEQDMM
VYVLLDANSQ IHFANHTIWR NSNAAHVLEA YSAKTHHEAV TQNREIILID FESLSIQVYY
PVFSSSRSRY SSAVDVIYLE YSIAIILFEA IDKLQQRLET VWGVGFLFIL LFYFIFYRLH
ISPLRRLSRA AKKVGMVNFH SDSAFWSAEL SVLHHYLTDV DGRLKRATKR LNDAERRWLF
SVEGSRNGIW DWNIATGAIF VSDRWKEILG FDAGDLTNDY LAWESRLHPD EKSQVLNTLQ
NYINHQKEDY ESVHRLKHKQ GHYIWVLDKG KIVEWDEQSR PIRIIGTITD VSGDVQHHRV
AIDKQSHNGL TDLINRDGLA NALFDLQVQC RQSETSAALI LVSLDNFSVI NDALGRQLGD
RLLMQIAARL TSTFSAVGLI ARLGTDEFVM LAAHLGPDAE QANRRALALA SEVKQLISRG
FTVSEQHLSI SAKVGVVVFD GIDSIEPHTL LARADTALSH ANDAAEGCIL YQASMDKNQL
QPAKLQQALA VAIDAGQLSL AFQPVVDVDG NLGSIEVLIR WYHVEYGFIA PTKIIATAEL
SEDIVKLELW VFEQVCSLIL ALEHQRVSSP IFSINISARS FHQEGFIQQL KQRMRQFPIK
GTPIQLELAE EVFNVNPQAA RKLVRELQEL GFLIALDNFG LSMGTLQYLQ GVSFSQVKLA
PRYLDGITDS AQSTKLLAAL VNMARDLGYA VVAKHIENKE LLKITTEIHC TWFQGYIISR
PLVEKDILQL IKSKLSLSVG
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