| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3615 |
|---|
| Symbol | |
|---|
| ID | 4020172 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 4334489 |
|---|
| End bp | 4335682 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637957676 |
|---|
| Product | 2-amino-3-ketobutyrate coenzyme A ligase |
|---|
| Protein accession | YP_564613 |
|---|
| Protein GI | 91794962 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0156] 7-keto-8-aminopelargonate synthetase and related enzymes |
|---|
| TIGRFAM ID | [TIGR00858] 8-amino-7-oxononanoate synthase
[TIGR01822] 2-amino-3-ketobutyrate coenzyme A ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.011325 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCATCTA CCTCATTCTA CGCTCGTATC AAGCAACAAA TCACCGACGT TAAAGCCGAA
GGTTTATATA AAAGCGAGCG CGTTATCGCT TCGGCCCAGC AAACGGCAAT CCAAGTTAAT
CACAATGAAG TTATTAACTT CTGTGCTAAC AATTATTTAG GATTAGCCAA CCACCCTGAA
CTCATTAACG CAGCCAAAAA CGGTCTGCAG AGCCATGGTT TTGGCATGGC ATCGGTGCGT
TTTATCTGTG GTACTCAAGA TATTCATAAA CAGCTTGAGC AAAGCTTGAG TGAATTCTTA
GGCATGGAAG ACACCATTCT TTATTCTTCT TGTTTCGATG CCAACGCCGG TTTGTTTGAA
ACCTTGTTAG ATGCCGAAGA TGCCATAGTG TCAGACGCCC TAAACCATGC CTCAATTATC
GATGGTGTTC GTTTATGTAA AGCCAAGCGC TTCCGTTACG CCAACAATGA CATGAACGAT
CTTGAAGTGC AGCTTAAAGC CGCTCAAGCT GCGGGTGCCC GCAACATTCT GATCGCCACC
GATGGCGTAT TCTCTATGGA TGGCGTTATT GCTAACCTAA AAGGCGTCTG CGATTTAGCC
GATAAATACG GCGCACTGGT TATGGTCGAT GACTCCCATG CCGTTGGTTT TATTGGTCAA
AATGGCCGTG GCACCCACGA ATATTGTGAC GTCATGGACA GAGTGGACAT CATCACAGGC
ACCTTAGGCA AGGCATTAGG CGGCGCATCG GGTGGTTTTA CTGCGGCGAA AAAAGAAGTG
GTTGAATGGT TACGTCAACG CTCGCGCCCG TATTTATTCT CAAACTCTTT AGCCCCCTCT
ATTGTCAGCG CCTCGATTCA TGTACTTGAA ATGCTAAAGA CCGGCCATGA CCTACGTGAA
GCCGTGTGGG AAAACAGCCG TTATTTCCGC GAGCAAATGA CAGCCGCAGG CTTTACCTTG
GGCGGCGCCG ATCACGCCAT CATTCCTGTA ATGATAGGTG ATGCTAAACT GGCTAGTGAC
TTTGCCAATC GTCTACTGGC AGAACAAATT TACGTGGTTG GCTTCTCTTT CCCTGTTGTG
CCTAAGGGTC AAGCCCGTAT TCGTACTCAA ATGTCTGCCG CTCACAGCCG TGAGCAACTA
GACAAAGCCA TTGATGCATT TACTCGTATT GGTAAAGACA TGGGCATTAT TTAA
|
|---|
| Protein sequence | MASTSFYARI KQQITDVKAE GLYKSERVIA SAQQTAIQVN HNEVINFCAN NYLGLANHPE
LINAAKNGLQ SHGFGMASVR FICGTQDIHK QLEQSLSEFL GMEDTILYSS CFDANAGLFE
TLLDAEDAIV SDALNHASII DGVRLCKAKR FRYANNDMND LEVQLKAAQA AGARNILIAT
DGVFSMDGVI ANLKGVCDLA DKYGALVMVD DSHAVGFIGQ NGRGTHEYCD VMDRVDIITG
TLGKALGGAS GGFTAAKKEV VEWLRQRSRP YLFSNSLAPS IVSASIHVLE MLKTGHDLRE
AVWENSRYFR EQMTAAGFTL GGADHAIIPV MIGDAKLASD FANRLLAEQI YVVGFSFPVV
PKGQARIRTQ MSAAHSREQL DKAIDAFTRI GKDMGII
|
|---|
| |