| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3601 |
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| Symbol | |
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| ID | 4020158 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 4315314 |
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| End bp | 4316474 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637957662 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_564599 |
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| Protein GI | 91794948 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.804898 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAAACG CCTTGAAGAT AGCCGCTGTG GTCACAGCAA CGATTTGGAT GTCAGCCTGT
AGTCAAGAGG GTCAAACTGA CGCTGCGGCT CAAGGTGCGC CGCCGCCCAC TCCTGTCAGT
GTGCTTAATG TCAGCACTCA GTCTCAAGCG ATTCAAGTGG AACTGCCTGG CCGTAGCCGC
GCCTTTAAAG AAGCAGAAGT ACGCCCTCAA GTCTCTGGCA TTATTACCGA ACGTAGCTTT
ATCGAAGGCA CGGACGTAAT CAAAGGTCAG TCGTTATATC AAATAGACTC AGCCACGTAT
CGCGCCGCGT TACTAAGTGC AGAAGCTGAC TTAGCCAGTG CCGAGGCAGG CTTAATCTCT
GCGAAAGCTA AGGCGGACCG CTTTCAATCT TTAGTGAAAA CCAAGGCCAT CAGCCAGCAA
GATTTTGATG AAGCACAAGC CGCTTTTAAA GAAGCGAAAG CCCGTGTCAC GGTTGCCAAA
GCCGCCATCA ACACCGCCAA TATTAGTCTG CAATACACTC AAGTGAAGGC GCCGATTTCG
GGTCGTATTG GTAAATCGAG CATCACAGCT GGGGCGCTAG TGACAGCCAA TCAAGCTGAC
ACCTTAGCCA CGATTTCTCA GCTTGACCCT ATCAATGTGG ACATAGCCCA ATCTAGCGCC
CAATTATTGC GCCTCAAAGC TAAATTTAGG CAAGGTGAGT TACAAAAAAG TGACAATGCC
GATGTCACCT TAGTATTGGA AGATGGCAGC AACTATCAAC ATACGGGCAC GCTTCGCTTT
GCCGAAGTGA GTGTCGATGA GGCCACAGGG TCTGTGACTT TGCGCGCCGA ATTCCCTAAC
CCGGATGCCT TATTACTCCC CGGCATGTAT GTGCGGGCCC TAATTAATAC AGGCCTAGAT
CCTAACGCGA TTTTGGTGCC TCAAAAAGCC ATTACTCGTA ACAGTAAAGG CGAAGCCGTG
GCCATGCTGG TCGATGTCAA CAACAAGGTG GAGATGCGCC CAGTCACCAC AGCTGAAGTC
ATAGATAATC AGTGGCGGAT CACCTCAGGT TTAACGGCTG GCGATAAGCT GATTGTCGAA
GGGTTGCAAA AAATTCGCCC AGGTGCAGAG GTTATGCCTC AGGTATGGTC TGCAGCGCCA
GAGGCTAATG CAGGCAACTA G
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| Protein sequence | MRNALKIAAV VTATIWMSAC SQEGQTDAAA QGAPPPTPVS VLNVSTQSQA IQVELPGRSR
AFKEAEVRPQ VSGIITERSF IEGTDVIKGQ SLYQIDSATY RAALLSAEAD LASAEAGLIS
AKAKADRFQS LVKTKAISQQ DFDEAQAAFK EAKARVTVAK AAINTANISL QYTQVKAPIS
GRIGKSSITA GALVTANQAD TLATISQLDP INVDIAQSSA QLLRLKAKFR QGELQKSDNA
DVTLVLEDGS NYQHTGTLRF AEVSVDEATG SVTLRAEFPN PDALLLPGMY VRALINTGLD
PNAILVPQKA ITRNSKGEAV AMLVDVNNKV EMRPVTTAEV IDNQWRITSG LTAGDKLIVE
GLQKIRPGAE VMPQVWSAAP EANAGN
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