| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3439 |
|---|
| Symbol | |
|---|
| ID | 4019987 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 4109385 |
|---|
| End bp | 4111742 |
|---|
| Gene Length | 2358 bp |
|---|
| Protein Length | 785 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637957491 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_564437 |
|---|
| Protein GI | 91794786 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1032] Fe-S oxidoreductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGTTG AATCCACATT ATTTCGTTTC CCTAAATACT GGGCTAACCA AGCAGGCTCG
GCACCTTTTT TGCCTATGTC ACGCAAGGAA ATGCATCAAC TAGGTTGGGA TAGCTGTGAC
ATTATTATCG TCTCAGGCGA TGCCTATGTG GATCACCCAA GTTTTGGTAT GGCGGTTATC
GGCCGTATGT TAGAGGCTCA AGGCTATCGA GTGGGGATCA TCGCGCAGCC GGATTGGTCC
AGCAAAGATG CCTTTATGGA ATTGGGGCGA CCTAATTTAT TTTTCGGCGT GACCGCAGGT
AACATGGATT CTATGATCAA CCGTTACACG GCGGATCGCA GAATGCGTCA CGACGATGCC
TATACCCCAG ACAATGTCGG TGGTAAGCGT CCTGACCGCG CCGTGACTGT GTACACCCAG
CGCTGCAAAG AAGCCTTTAA AGATGTGCCT GTGGTTATTG GCGGCATAGA AGCCAGTCTA
CGCCGTATCG CTCATTACGA TTATTGGTCA GACAAAGTGC GCCGCAGCGT AATTTTTGAT
GCTAAGGCCG ATATTCTCAT TTACGGTAAT GCTGAGCGTC CTTTGGCCGA AGTCGCCCGT
CGACTCGGTG CTGGCGAACC CATCAGCAGT ATCGACGATG TTCGCGGCAC TGCTGTGATC
CGTAAGACGC CAATGCCAGA ATGGCGCGGC ATGGATTCAC GTAAAATCGA TCAGCTGCAT
AAAATTGAAC CTATTCCTAA CCCCTATGGT GCCGATGATG TCGGTTGTGC CAATTTATCT
GGCCCTACGG ATGCAAAAAT TTTCGATAAC GATGCACCTA AGCCCATCAG TGTGCAGCCA
CCTAAGCCAA AACCGTGGGA AAATACCTAC GTTCTGTTGC CGGCGTTTGA GAAGGTCAGT
GAAGATAAGT ATCTCTACGC TCACGCTTCA CGTATTTTGC ACCAAGAGCA AAACCCTGGT
TGTGCCCGAG CCTTATTTCA ACCTCACGGT GACCGTGGTA TTTGGGTTAA CCCACCGGCG
TGGCCGCTCA ATACCGATGA AATGGACGGG GTATTCGATT TGGCTTATCA GCGTGTGCCA
CACCCTGTGT ATGGCAAGGC GAAAATCCCT GCCTATGACA TGATAAAAAC CTCGATAAAT
ATCATGCGTG GTTGTTTTGG TGGTTGTTCA TTCTGCTCTA TCACTGAGCA TGAAGGCCGT
ATTATTCAGA GCCGTTCACA AGAATCAATC GTTAAAGAAA TCAAAGATAT CCAAGATAAA
GTGCCAGGTT TTACTGGGGT AATTTCCGAT CTTGGTGGCC CAACAGCCAA CATGTATCGT
TTGGGTTGCT CAAGTGAAAA AGCAGAGAAA ACCTGTCGCC GCTTATCTTG TGTGTTTCCG
GTAATTTGTG GTCATTTGAA TACAGATCAT AAGCACACAG TGGACTTGTA TCGCGCTGCC
CGTGATGTGC CAGGCATTAA GAAGGTGCTT ATCGCCTCTG GGGTGCGTTA CGATTTAGCC
ATACAAGACC CAAGTTACAT CAAAGAATTG GCTAAGCATC ATGTGGGCGG TTATTTAAAA
ATTGCCCCTG AGCACACCGA AGAAGGCCCA TTGAGCAAGA TGATGAAGCC GGGCATGGGC
ACTTACGATA AATTCAAAGA GTTATTTGAT AAGTTCTCCA AGGAAGCGGG TAAGGAGCAG
TTCTTAATTC CTTATTTTAT TTCGGCGCAT CCGGGTACCA CCAACGAAGA TATGGTGAAT
TTAGCACTGT GGCTAAAAGG ACAGAAGTTT AAGCTAGATC AAGTGCAAAA CTTCTATCCA
TCGCCTATGG CCAATGCCAC CACGATTTAT CACACTGAGC TTAACTCATT GAAGAATGTG
AAACATGACA GTGAGCAAGT GACCGTACCT AAGAAGGGCC GTCAACGCCG CTTGCATAAA
GCTTTATTGC GTTATCACGA TCCAGCCGGT TGGCCACTCA TTCGTGAAGC CTTGATTGCC
ATGGGTAAAG AGTCACTGAT TGGTAATAGT CCTCATCAAC TGGTACCAGC CGAAACTCGA
GCCGAGCGCA GTGGTAAGCA ATGGGGAAAA ACCGCCAGCA GTAACTCAGG TGGCAACAAA
GCCGTCGCTA AAGGTAAGGC TAGCCCCAAA GGCGCAGCAA AAGACAAAGG CGCTGAGAAA
GGTCAAATGG CGATGACGCG TTTCTCATCC AATCAATTTG AAGACCGTAA ACAGGCGGGT
GAAGAGGGGG CTAAATCAGG CCGTTCTTCA AGTGGTACTA AAGCCTCGAA TAAGAATAAA
TCGAGTCACA CTGGAGCTAA AAAACCTTTG GGCGCTAAGC CCAAATTTGG CACCAAAGCG
AGCCAAGGCA AACACTAA
|
|---|
| Protein sequence | MQVESTLFRF PKYWANQAGS APFLPMSRKE MHQLGWDSCD IIIVSGDAYV DHPSFGMAVI
GRMLEAQGYR VGIIAQPDWS SKDAFMELGR PNLFFGVTAG NMDSMINRYT ADRRMRHDDA
YTPDNVGGKR PDRAVTVYTQ RCKEAFKDVP VVIGGIEASL RRIAHYDYWS DKVRRSVIFD
AKADILIYGN AERPLAEVAR RLGAGEPISS IDDVRGTAVI RKTPMPEWRG MDSRKIDQLH
KIEPIPNPYG ADDVGCANLS GPTDAKIFDN DAPKPISVQP PKPKPWENTY VLLPAFEKVS
EDKYLYAHAS RILHQEQNPG CARALFQPHG DRGIWVNPPA WPLNTDEMDG VFDLAYQRVP
HPVYGKAKIP AYDMIKTSIN IMRGCFGGCS FCSITEHEGR IIQSRSQESI VKEIKDIQDK
VPGFTGVISD LGGPTANMYR LGCSSEKAEK TCRRLSCVFP VICGHLNTDH KHTVDLYRAA
RDVPGIKKVL IASGVRYDLA IQDPSYIKEL AKHHVGGYLK IAPEHTEEGP LSKMMKPGMG
TYDKFKELFD KFSKEAGKEQ FLIPYFISAH PGTTNEDMVN LALWLKGQKF KLDQVQNFYP
SPMANATTIY HTELNSLKNV KHDSEQVTVP KKGRQRRLHK ALLRYHDPAG WPLIREALIA
MGKESLIGNS PHQLVPAETR AERSGKQWGK TASSNSGGNK AVAKGKASPK GAAKDKGAEK
GQMAMTRFSS NQFEDRKQAG EEGAKSGRSS SGTKASNKNK SSHTGAKKPL GAKPKFGTKA
SQGKH
|
|---|
| |