| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3435 |
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| Symbol | |
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| ID | 4019983 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 4103673 |
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| End bp | 4105778 |
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| Gene Length | 2106 bp |
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| Protein Length | 701 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637957487 |
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| Product | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase |
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| Protein accession | YP_564433 |
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| Protein GI | 91794782 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.821771 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTATCTGT TTGAAGGTCT AAAGGAATCT GCTTCCGGCT ATTTAGAGCC GGAGCAGGTA
GAATTACTCA AGCAGGCTTA TTTAGTTGCG CGTGATGCCC ATGAAGGGCA AATGCGCACA
AGTGGCGAAC CTTACATTAC CCATCCTGTT GCGGTTGCCC GCATCTTAGC CGACATGCGC
CTCGATCATG AGTCCTTGAT GGCTGCCCTG CTCCACGACA CCATAGAAGA CACCCCAGTT
ACCAAAGAAG AACTCACTGA GTTATTTGGT TTGACGGTCG CTGAATTGGT GGAAGGGGTT
TCTAAGCTAG ATAAAATCAA ATTCCGCGAC AAGAAAGAAG CCCAAGCCGA AAACTTTCGC
AAGATGATGA TGGCCATGAC TCAAGATATT CGAGTCATCT TAATTAAGCT CGCCGATCGC
ACCCACAATA TGCGCACCTT AGGCGCCTTA AGGCCGGACA AGCGCCGCCG CATTGCCCGA
GAAACCTTAG AAATTTACGC CCCGATTGCT AATCGACTGG GTATCCACAA TATCAAAATT
GAGCTGGAAG ACTTAGGTTT TCAAGCCTAT TACCCTATGC GCTATCGGGT GATAAAAGAA
GTGGTCAAGG CCGCACGAGG CAATCGCAAA GAGTTAATCA ATACCATAGA AGCCGGTATA
GCTGCACGTT TAGAGGAAGC TGGGATCAAG TGCTTCGTCA AAGGTCGTGA GAAAAACCTC
TACGCCATTT ACCGAAAAAT GCGCAGTAAA GAGCTGCAAT TTCAAGAAGT CATGGATATC
TATGCCTTTA GAGTCGTAGT CAACAACATA GACACTTGTT ATCGCGTCTT GGGGGCCATG
CATGGCCTGT ATAAACCCAG ACCTGGGCGC TTTAAAGACT ATATAGCCAT CCCTAAGGCC
AATGGCTACC AATCGCTGCA CACTTCCTTA TTTGGCCCCC ATGCTGTCCC TGTTGAAGTG
CAAATTCGCA CCGAAGAGAT GGATCAGATG GCGGACAAAG GGGTCGCCGC CCACTGGATG
TACAAAAATG GCACCTCATC ATCGGCACAA AGTACCACCC AGGTACGTGC GCGTAAGTGG
ATGCAAAGCT TGCTCGAATT GCAACAGAGT GCCAGCAGCT CGTTTGAATT CGTTGAAAAC
GTTAAAACTG AACTCTTCCC CGAAGAAATT TACGTGTTTA CCCCAGAAGG GCGCATTTTA
GAGTTACCCG TCAACGCTAC CGCCGTCGAC TTTGCCTATG AAGTGCATAC CGATGTCGGC
AACACCTGCG TGGGCGCGCG GGTGAATCGT CAGGCCTACC CTTTGAGTCA GCCGCTGATT
TCAGGCCAGA CAGTCGAGAT TATTACCGCT AAAGGCGCGA GGCCCAATGC GGCCTGGCTT
AACTTTGTGG TCACAGGTAA GGCTCGTGGC AAAATTCGCC AAGTGCTGAA AAGCATGAAA
GGCGCCAATG CCATAGTCCT AGGTAAACGC CTGCTCAATC ATGCTCTGGG GGTCAATAAG
CTTGAAAGCA TACCTCAAGA GCAGCTTGAA AAAGTTATCC GCGAAACTAA GCACAAAGAT
CTCGATTCAT TGTTAGCCGA TATCGGCCTT GGCAACGCTA TGAGCATAGT CATAGCTCAA
AGGCTGTTAG GCGATCTTGT TGATAATAAT GAAAATAAAG AAAACAACTT AATGCCAATC
CGTGGCTCAG AAGGCATGTT AGTCACGTTC GCAAACTGCT GCCGCCCCAT TCCTGGTGAC
GCTGTGATTG CCCACGTCAG CCCGGGTAAA GGGCTAGTGG TTCATATGGA AAACTGTGCC
AATATTCGCG GTTATCAAGG CGAGCCAGAT AAATACATCC CTGTACAGTG GGATAATGTC
GACGGCGTTG AATATCAAGC TAACTTGCGG GTTGAAATTG TTAACCATCA AGGCGCTCTG
GCCAAGATCA CCTCTATCAT TGCCGCCACG GGTTCAAACA TTCACAATCT CAGCACCGAA
GAGCGTGACG GCCGTGTTTA TATGATTAAC TTACGCATCG CAGTGACTGA CAGGGTGCAC
CTAGCGAACG TGATGCGCCG CATCCGCGTA CTGCCAGAAG TATTACGCAC ATCGAGAAAT
CGATAA
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| Protein sequence | MYLFEGLKES ASGYLEPEQV ELLKQAYLVA RDAHEGQMRT SGEPYITHPV AVARILADMR
LDHESLMAAL LHDTIEDTPV TKEELTELFG LTVAELVEGV SKLDKIKFRD KKEAQAENFR
KMMMAMTQDI RVILIKLADR THNMRTLGAL RPDKRRRIAR ETLEIYAPIA NRLGIHNIKI
ELEDLGFQAY YPMRYRVIKE VVKAARGNRK ELINTIEAGI AARLEEAGIK CFVKGREKNL
YAIYRKMRSK ELQFQEVMDI YAFRVVVNNI DTCYRVLGAM HGLYKPRPGR FKDYIAIPKA
NGYQSLHTSL FGPHAVPVEV QIRTEEMDQM ADKGVAAHWM YKNGTSSSAQ STTQVRARKW
MQSLLELQQS ASSSFEFVEN VKTELFPEEI YVFTPEGRIL ELPVNATAVD FAYEVHTDVG
NTCVGARVNR QAYPLSQPLI SGQTVEIITA KGARPNAAWL NFVVTGKARG KIRQVLKSMK
GANAIVLGKR LLNHALGVNK LESIPQEQLE KVIRETKHKD LDSLLADIGL GNAMSIVIAQ
RLLGDLVDNN ENKENNLMPI RGSEGMLVTF ANCCRPIPGD AVIAHVSPGK GLVVHMENCA
NIRGYQGEPD KYIPVQWDNV DGVEYQANLR VEIVNHQGAL AKITSIIAAT GSNIHNLSTE
ERDGRVYMIN LRIAVTDRVH LANVMRRIRV LPEVLRTSRN R
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