Gene Sden_3292 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_3292 
Symbol 
ID4019840 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp3920461 
End bp3921933 
Gene Length1473 bp 
Protein Length490 aa 
Translation table11 
GC content46% 
IMG OID637957345 
ProductRNA-metabolising metallo-beta-lactamase 
Protein accessionYP_564291 
Protein GI91794640 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGATGA GCTTACAATT TTTAGGGGCA ACTCAAGAGG TGACAGGCTC TTGTCATTTG 
CTCACTGTCG ATGGTCAACA ATTACTGCTG GACTGCGGTT TAATTCAAGG CGGCAAGGCC
GATGAGTTAC GTAATCATGA TCCGTTTGAT TTTAAGCCAT CTCAGATTGA CGCGGTGATC
TTGAGCCACG CTCATATCGA TCACTCTGGC CGTTTACCCC TTCTGGTTAA ACAAGGCTTT
AATGGTCCCA TTTATACTCA TAAAGCGACG GCAGAGCTGT GCGGCATTAT GCTAAGGGAT
GCCGCCATGC TGCAAGAAAG GGATGCGCAA AGAAAAAGTA AAAAGTTAAA AAAACTAAAT
CTTGATCCCG TCGATGCATT ATTTGATGAA GACGATGTCG AAGCCGTGCT TAAATTATTC
GTCCCCCTCG AATATGGTGC ACAAACAAAG TTGATGCCTC ATGTCAGTGT GCGCTTGTCC
GATGCGGGTC ATATTTTGGG TTCTGCCATC GTTGAGCTTT GGTTAGCGGA GGGGAGTGAG
GCGAAAAAGA TCGTCTTTAG CGGCGATCTT GGCCGTGCCG ATATGCCTAT TCTCGATGAT
CCCTGCTTGA TTGATAGTGC CGATTTAGTG CTTATGGAAA GTACCTATGG CAATCGATTA
CACCGAAGCT GGGAAGAGAC CTTAACCGAA CTAAAAGCCA TTTTTGCCAG CACCATTAAA
CAGAGTCGCG GTAATATTTT ATTGCCTGCG TTTTCCGTTG GTCGAGCTCA AGAGTTATTG
TATTTATTCC ATTTATACGC AAAAGAGTGG GACTTATCCC GTTGGCGAAT TTGCCTAGAT
AGCCCGATGG CCATTAAAGC CACTCAAGTG TATGTCAATA ATTACCCATT AATGGATGAA
GACTTTAAGC GCTTTACGCG CTTATCACCG GGTAAGCATC CTTTGCTTTC CAATGCCGAA
TTTACCAGTA GTACAGAAGA GTCCATTGAA CTTAATGATA TCCATGAAGG GCTTATTATC
ATAGCCGGCA GCGGCATGTG TAATGGGGGG CGCATTCGCA ATCATCTGGC CCATAATTTG
TGGCGCAGTG CTGCAGATGT GATCATTTGT GGTTATCAGG CTCTAGGAAC CCCAGGAAGG
TTATTAGTGG ACGGCGCTAC TGAGCTGACT ATTCATGGTC AAAAAGTGAA GGTCGCAGCG
AGGCTGCATA CCATTGGTGG ATTATCTGCT CATGCAGATC AGGCTGAGTT ATTACGCTGG
TATCGACATT TTGAAAATTC ACCCCCTGTG GTATTGGTTC ATGGGGAGAA AGAAGCTCAG
GCTGTGCTTA TGGAAGCCTT AAGCGAAAAT CTTGATACTT CCCCGCAGGC AGCCGCTATC
GCTGAGCACA GGGATTGCCT CGATCTCAGT AAATTACCTA AGCTTGTTTG GATCCATGCT
GAGTGTGTTC AATGGGGAAG GAGGCTAAGA TAA
 
Protein sequence
MEMSLQFLGA TQEVTGSCHL LTVDGQQLLL DCGLIQGGKA DELRNHDPFD FKPSQIDAVI 
LSHAHIDHSG RLPLLVKQGF NGPIYTHKAT AELCGIMLRD AAMLQERDAQ RKSKKLKKLN
LDPVDALFDE DDVEAVLKLF VPLEYGAQTK LMPHVSVRLS DAGHILGSAI VELWLAEGSE
AKKIVFSGDL GRADMPILDD PCLIDSADLV LMESTYGNRL HRSWEETLTE LKAIFASTIK
QSRGNILLPA FSVGRAQELL YLFHLYAKEW DLSRWRICLD SPMAIKATQV YVNNYPLMDE
DFKRFTRLSP GKHPLLSNAE FTSSTEESIE LNDIHEGLII IAGSGMCNGG RIRNHLAHNL
WRSAADVIIC GYQALGTPGR LLVDGATELT IHGQKVKVAA RLHTIGGLSA HADQAELLRW
YRHFENSPPV VLVHGEKEAQ AVLMEALSEN LDTSPQAAAI AEHRDCLDLS KLPKLVWIHA
ECVQWGRRLR