Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_3292 |
Symbol | |
ID | 4019840 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 3920461 |
End bp | 3921933 |
Gene Length | 1473 bp |
Protein Length | 490 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637957345 |
Product | RNA-metabolising metallo-beta-lactamase |
Protein accession | YP_564291 |
Protein GI | 91794640 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAGATGA GCTTACAATT TTTAGGGGCA ACTCAAGAGG TGACAGGCTC TTGTCATTTG CTCACTGTCG ATGGTCAACA ATTACTGCTG GACTGCGGTT TAATTCAAGG CGGCAAGGCC GATGAGTTAC GTAATCATGA TCCGTTTGAT TTTAAGCCAT CTCAGATTGA CGCGGTGATC TTGAGCCACG CTCATATCGA TCACTCTGGC CGTTTACCCC TTCTGGTTAA ACAAGGCTTT AATGGTCCCA TTTATACTCA TAAAGCGACG GCAGAGCTGT GCGGCATTAT GCTAAGGGAT GCCGCCATGC TGCAAGAAAG GGATGCGCAA AGAAAAAGTA AAAAGTTAAA AAAACTAAAT CTTGATCCCG TCGATGCATT ATTTGATGAA GACGATGTCG AAGCCGTGCT TAAATTATTC GTCCCCCTCG AATATGGTGC ACAAACAAAG TTGATGCCTC ATGTCAGTGT GCGCTTGTCC GATGCGGGTC ATATTTTGGG TTCTGCCATC GTTGAGCTTT GGTTAGCGGA GGGGAGTGAG GCGAAAAAGA TCGTCTTTAG CGGCGATCTT GGCCGTGCCG ATATGCCTAT TCTCGATGAT CCCTGCTTGA TTGATAGTGC CGATTTAGTG CTTATGGAAA GTACCTATGG CAATCGATTA CACCGAAGCT GGGAAGAGAC CTTAACCGAA CTAAAAGCCA TTTTTGCCAG CACCATTAAA CAGAGTCGCG GTAATATTTT ATTGCCTGCG TTTTCCGTTG GTCGAGCTCA AGAGTTATTG TATTTATTCC ATTTATACGC AAAAGAGTGG GACTTATCCC GTTGGCGAAT TTGCCTAGAT AGCCCGATGG CCATTAAAGC CACTCAAGTG TATGTCAATA ATTACCCATT AATGGATGAA GACTTTAAGC GCTTTACGCG CTTATCACCG GGTAAGCATC CTTTGCTTTC CAATGCCGAA TTTACCAGTA GTACAGAAGA GTCCATTGAA CTTAATGATA TCCATGAAGG GCTTATTATC ATAGCCGGCA GCGGCATGTG TAATGGGGGG CGCATTCGCA ATCATCTGGC CCATAATTTG TGGCGCAGTG CTGCAGATGT GATCATTTGT GGTTATCAGG CTCTAGGAAC CCCAGGAAGG TTATTAGTGG ACGGCGCTAC TGAGCTGACT ATTCATGGTC AAAAAGTGAA GGTCGCAGCG AGGCTGCATA CCATTGGTGG ATTATCTGCT CATGCAGATC AGGCTGAGTT ATTACGCTGG TATCGACATT TTGAAAATTC ACCCCCTGTG GTATTGGTTC ATGGGGAGAA AGAAGCTCAG GCTGTGCTTA TGGAAGCCTT AAGCGAAAAT CTTGATACTT CCCCGCAGGC AGCCGCTATC GCTGAGCACA GGGATTGCCT CGATCTCAGT AAATTACCTA AGCTTGTTTG GATCCATGCT GAGTGTGTTC AATGGGGAAG GAGGCTAAGA TAA
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Protein sequence | MEMSLQFLGA TQEVTGSCHL LTVDGQQLLL DCGLIQGGKA DELRNHDPFD FKPSQIDAVI LSHAHIDHSG RLPLLVKQGF NGPIYTHKAT AELCGIMLRD AAMLQERDAQ RKSKKLKKLN LDPVDALFDE DDVEAVLKLF VPLEYGAQTK LMPHVSVRLS DAGHILGSAI VELWLAEGSE AKKIVFSGDL GRADMPILDD PCLIDSADLV LMESTYGNRL HRSWEETLTE LKAIFASTIK QSRGNILLPA FSVGRAQELL YLFHLYAKEW DLSRWRICLD SPMAIKATQV YVNNYPLMDE DFKRFTRLSP GKHPLLSNAE FTSSTEESIE LNDIHEGLII IAGSGMCNGG RIRNHLAHNL WRSAADVIIC GYQALGTPGR LLVDGATELT IHGQKVKVAA RLHTIGGLSA HADQAELLRW YRHFENSPPV VLVHGEKEAQ AVLMEALSEN LDTSPQAAAI AEHRDCLDLS KLPKLVWIHA ECVQWGRRLR
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