| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3287 |
|---|
| Symbol | |
|---|
| ID | 4019835 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3912621 |
|---|
| End bp | 3914378 |
|---|
| Gene Length | 1758 bp |
|---|
| Protein Length | 585 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637957340 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_564286 |
|---|
| Protein GI | 91794635 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3540] Phosphodiesterase/alkaline phosphatase D |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCATA ATGTTTCACG TCGTGACTTT TTAGCCATGT CAGCCAAAGG TGTTGGCGCT
GCGGTTATTT CTTATGGCCT TATGGGCTGT GGTAGCGAAG AAAAAAAAAT TCCTGGTGAA
TTTTTGCATG GTGTAGCCAG TGGTGATCCG ACCCACAAAG AAGTGATCCT CTGGACTCGT
GTGACCCCTG AATATGATGG AGACGTCTCG GTTTATTGGG AGCTTGCCAC AGATGATACT
TTCAGTAGTT TGGTGCAAAC GGGTAGTATG CTGACTAATA TTGGTCGCGA CTACACCGTC
AAAGTTGATG CCATTCAGCT GGAAGCAGGC AAGCAATATT TCTACCGTTT CAAATGTGGC
GATAATTTAT CGCCAGTGGG CAAAACCCGC ACTTTGCCAG AAGGCGCTGT GACTTCAGTT
AAATTGGCGG TACTGTCTTG TGCTAACTTC CCCGCCGGCT ACTTTAACGT CTATGAACTG
GCGGCGCAGC GTGATGATTT AGATGCCGTG GTGCACTTAG GCGATTACCT CTATGAGTAT
GCCAGAGGGG GTTACGCCAG TGAGAATGCC GCTTCTCTTG GTCGTGAAGT GCTACCCGCC
CATGAGTTAA TATCTTTAAC TGATTATCGC AGTCGTTATG GTCAATATCA TCAGGATGCG
AGTTTGCAAA AACTGCATGC CAAAGTGCCT TTCATCACAG TGTGGGACGA TCATGAAGTG
GCCAATGATG CCTGGCGCGA AGGGGCTGAA AATCATCAAG CTGCAGAAGG GGATTTTGAT
CTACGTAAGC AATCAGCACT GCAAGCCTAT TTTGAATGGC TGCCCATTCG ACCATGGCGT
GAAGGCAATC ATGAAGATAT CTATCGAAGC TTCAGTTTCG GTGATTTAGT CGACTTACAC
ATGCTAGACA CCCGTCTTGT GGGGCGTGAT AAGCAGCTCG ATTACGCTAG CTACATGGAC
CCTAACAGCG GGGCTTTTAA CGATAAAGCC TTTAAAGCCG ATGTGACCTG GCCTTACCGT
ACCATGCTAG GTCAAACTCA GCTGGAGTGG CTGCAGGGCA CCTTGCTACA GGCAACCGGT
AAGTGGCAGG TATTGGGGCA ACAAGTCTTG ATGGGGCAGA TGTCATTGCC TGCTGCAATT
GCCATGCAAA CCCTCTCTAT TCCAGAGTTT GCTGAGCTAG GGGCATTAGC GCAACTTGCT
GGACGAGCTC AGGCGGGGGA TCCTAGCTTG ACAGCCGATG AGCTAACCTA CCTGCAAGCC
AATCAGGGCA AGTTGACCCC AGAGGTATTA GCCCAGCTAC AGCTGCCAGC TATTCCTTAT
AACTTGGATG CTTGGGACGG TTATTTCTAC GAGCGTGAAG TGATTTTAAG TACCGCTAAA
TCTGCGAACC ACAACTTAGT GGTATTAGCC GGTGATACTC ATAATGCCTG GGCCAACGAA
CTCAAGGATT ATAAAGGCAA TGCCATCGGG GTGGAGTTTG CTACCAGCTC AGTGTCATCA
CCGGGTCTTG AGTACTACCT CAATATCCCC CTTGAGCAAA TCCCCGCCAC AGAAGCGGCA
ATCGTGGGCA TGGTAGAGCA TTTGAAATAC GCTAATCTCA AAGATAGGGG TTACATGATG
CTGAGTTTCA CACCTGAAGA AGTGCGCAGC GATTGGTTTT TTGTGGATAG CATACTCAGT
AAAGACTTTA ATCTTGCCAG TGACAGAAAC TACAGCGCCG TGACTAAAAT TGGCGTGCCG
AGCATTGCTC CAGTGTAG
|
|---|
| Protein sequence | MTHNVSRRDF LAMSAKGVGA AVISYGLMGC GSEEKKIPGE FLHGVASGDP THKEVILWTR
VTPEYDGDVS VYWELATDDT FSSLVQTGSM LTNIGRDYTV KVDAIQLEAG KQYFYRFKCG
DNLSPVGKTR TLPEGAVTSV KLAVLSCANF PAGYFNVYEL AAQRDDLDAV VHLGDYLYEY
ARGGYASENA ASLGREVLPA HELISLTDYR SRYGQYHQDA SLQKLHAKVP FITVWDDHEV
ANDAWREGAE NHQAAEGDFD LRKQSALQAY FEWLPIRPWR EGNHEDIYRS FSFGDLVDLH
MLDTRLVGRD KQLDYASYMD PNSGAFNDKA FKADVTWPYR TMLGQTQLEW LQGTLLQATG
KWQVLGQQVL MGQMSLPAAI AMQTLSIPEF AELGALAQLA GRAQAGDPSL TADELTYLQA
NQGKLTPEVL AQLQLPAIPY NLDAWDGYFY EREVILSTAK SANHNLVVLA GDTHNAWANE
LKDYKGNAIG VEFATSSVSS PGLEYYLNIP LEQIPATEAA IVGMVEHLKY ANLKDRGYMM
LSFTPEEVRS DWFFVDSILS KDFNLASDRN YSAVTKIGVP SIAPV
|
|---|
| |