| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3225 |
|---|
| Symbol | tolC |
|---|
| ID | 4019754 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 3860278 |
|---|
| End bp | 3861576 |
|---|
| Gene Length | 1299 bp |
|---|
| Protein Length | 432 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637957278 |
|---|
| Product | outer membrane channel protein |
|---|
| Protein accession | YP_564224 |
|---|
| Protein GI | 91794573 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000000929322 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTA AAATGGGTTC TTTATACGCA GCATTGACGC TAGCAATCGT AGCGCCAAGC
ACTCAAGCTG ATGATTTATT ACAAATTTAT CAGCAAGCAT TAACCAGCGA TCCTATCGTA
CTGCAAGCGC AAGCACAGCG TAACGCCTTG TATGAAAAAA TTGAAGAGAA TCGCTCACCG
TTACTCCCAA GCTTAAGCGC AAGCGTTGGT TATGATAAAA ACTGGCACGA TCTCCAAGGG
GATAGCGATG GCTATGCAGG TAAAGTGTCG TTATCTCAGC TGATTTACGA TCACAGTGCT
TGGGTAGGCT TAAGTTTGGC AGAAAAAGCC GCCTCTCAGG CTGATTCAGC TTATGCCTCT
GCAATGCAAA ACCTGATCAC CCGCGTCACC AGCGCCTATT TTGACGTATT GACCGCCAAA
GATAATTATG AGTTTCAGGG CGCAGAGAAG CGCGCCATCG AACGCCAACT TGAACAGACT
AAGCAAAGAT TCGCCGTTGG CTTAACCGCG ATTACCGATG TCCATGAAGC CCAAGCGCAG
TTTGACTTAG CCTCAGCCGC TGAAATTTTA GCAGAAAATA CCTTAGCCAA CAGTTATGAA
GCCCTGCGTG AAATCACAGG TGTCGATCAC AAGACTATTA ATGTGCTTGA TACTGAGCGC
TTCTCTGCTA GTGCTGTTAG CCCAGCCAGT TCAGCAGATT GGTTAAAAAT GGCTGAAAAC
CGCAGCATAG ATTTAATGAC TCAGCGCATT GCCAAAGACA TAGCCCAAGA AACCATCACG
CTTTACAAGG CTGGCCATAT GCCAACCGTC AATTTTGACG CCAATTACAC TAAGGCTTTT
GATCAATCTC CAATAGCTGA TTTCGACAGC AAGTCTGTGG GCGTCAGTAT TAAAGTGCCT
ATTTTCGAAG GTTTCAAAAT TGACTCTAAA GTTAAGCAAG CACAATACCA GTACGTAGAA
GCCAGTGAAA AGCTCGAGCA GACCCACAGG GGCGTTGTGA AAAACGTACG CAACAACTTT
AACAACGTGT CGGCCTCAAT TAGCTCAATT CGTGCTTATG AGCAATCAGT GGTGTCCTCT
GAGAGCGCCT TAAAAGCCAC CCAAGCTGGC TTTGAAGTGG GTACTCGTAC TATCGTTGAC
GTGTTAAATC GTACCCGTGA TTTGTATGAT TCCAAGCGTA AGTTATCAGA TGCCCGTTAT
GGATATATCA AATCTATCCT AGCGCTTAAG CAAGCAGCAG GTACCATTAA CGAAGATGAT
GTGATTGCCA TTAACAGTGG CTTAAAAAAC CCTGAGTAA
|
|---|
| Protein sequence | MKFKMGSLYA ALTLAIVAPS TQADDLLQIY QQALTSDPIV LQAQAQRNAL YEKIEENRSP
LLPSLSASVG YDKNWHDLQG DSDGYAGKVS LSQLIYDHSA WVGLSLAEKA ASQADSAYAS
AMQNLITRVT SAYFDVLTAK DNYEFQGAEK RAIERQLEQT KQRFAVGLTA ITDVHEAQAQ
FDLASAAEIL AENTLANSYE ALREITGVDH KTINVLDTER FSASAVSPAS SADWLKMAEN
RSIDLMTQRI AKDIAQETIT LYKAGHMPTV NFDANYTKAF DQSPIADFDS KSVGVSIKVP
IFEGFKIDSK VKQAQYQYVE ASEKLEQTHR GVVKNVRNNF NNVSASISSI RAYEQSVVSS
ESALKATQAG FEVGTRTIVD VLNRTRDLYD SKRKLSDARY GYIKSILALK QAAGTINEDD
VIAINSGLKN PE
|
|---|
| |