| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3164 |
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| Symbol | |
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| ID | 4019690 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3793109 |
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| End bp | 3795415 |
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| Gene Length | 2307 bp |
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| Protein Length | 768 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637957214 |
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| Product | penicillin-binding protein 1B |
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| Protein accession | YP_564163 |
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| Protein GI | 91794512 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | [TIGR02071] penicillin-binding protein 1B |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGACTA AAGCAAAAAC GAAATCGAAA TCAACAAAAA CGCGTAAATC AGGTTCTTCT
TGGTTGGCTC GCCTCTGGTC CATCGGCTGG AAACTCAGCA TAGTACTGCT GGCATTTTGC
AGCTTTTATT CTATTTATTT GGATCAAATC ATCGCCCGTA AATTTGAGGG CCAGAAATGG
CACCTGCCGG CGCAAGTGTT TAGCCGTTCC ATGGCGCTCT ATCCTGGGGC TGCGGTGAAT
CATCCGCAAT TAATGGCCGA ACTTAAATTG CTGGGCTATC GAAAAGTCGC TAACCCGACT
CAAGTGGGGG AGTTTTCAGC TTCCAGCACC CGCATCGAAC TGTGGCGCCG ACCTTTCTTG
CACCCTGAAG GGGATCAAGC TGAGCTGCGG GTAATGATAA GTTTCGACAG TTACGGCATT
AATTCCGTGA GACGCATGAC TGATAAGCGT GAGCTTGCAG TGTTCCATCT GGAGCCTGTG
CTGCTGGATA GAATTATCGC AGGTGACGGT GAAGACAGGG TATTTGTGAA CACTGAAGCC
ATGCCCCAGG CGATTGTGGA TGCGCTGATT TTGGTGGAAG ATCGCAGCTT TTATGAGCAT
CATGGGGTGA ATCCGTTTGC CATAGCACGA GCCGCCTTAG TCAATATAAG CGCGGGTCGT
ACTGTGCAAG GTGGCTCTAC CTTAACTCAG CAGCTAGCGA AGAACTTTTT CTTAAGCAGT
GAGCGCTCTA TCGTGCGCAA ATTGCGTGAA GCCTTGATGG CGCTCATCAT AGATTTTCGC
TACAGCAAGG ATGCAATTTT AGAAGCCTAC TTGAATGAAG TGTATATGGG GCAAGACAAG
TCCCGCGGCG TGCATGGCAT GGGGCTGGCT TCACAGTTTT ATTTTGGCCG CCCAGTGGCA
GAGCTCACTA TAGCGCAGCA AGCCTTCTTG GTGGCTGTGA TTAAAGGGCC ATCCTATTAC
AATCCATGGC GTTACCCTGA ACGCGCCCAA GAGCGCCGTG ATTTAGTGCT GCGTTTATTG
ATGGAAGACA ATAAATTAAC AGTGGCACAG TACAAGGCGG CAGCGCGCTC ACCCTTGGCA
CTGCGTGATG CTAGACGTTC GGCTCATCAA CAATTACCTG CCTTCTTTGC TGTGGTTAAA
AATGAGTTAA AGCAGCGCTA TGGTACTGGG CTATTAAAAG AGTCTGGGGT CAAGGTCTAC
ACTACGCTTG ATCCTATGGC GCAGGAGGCG GCTGAGAAAG CCGTTGTATC CACCATGAAA
TCATTAGAGT CACGGACTAA AAATGTCCAA GTGGGCATGG TGGTTACCGA TAAATACACA
GGCGGGATTG CCGCCATGGT GGGGGATAAG GTACCTGGGT TTAGCGGCTT TAACCGTGCG
GTTGAAATAC GTCGCCCCAT AGGCTCGTTA GTGAAACCTT TTGTTTATGC CACGGCGTTA
ACCCAAGGGG ATAAATTTAC CCTAGCGACC CCCATTGATG ATAATCCAAT CACCTTGAAA
AACGAGCAAG GTAAGCTGTG GTCACCCAAA AACGTCGATA AGAAATTCTC GGGTTCCGTG
CCACTAATGA CGGCGTTTAA ACAATCGATG AACGTGCCTA CAGTGAACGT GGGTTTAAAA
GTGGGGGTGG ATAATGTTGC GCAAACCCTC GCCAATGCCG GCTGGTCTGA AGCCATTAAC
CCATACCCCT CTATGCTACT CGGGGCGATT AATGGCTCGC CCTTAATGGT GGCGCAAACT
TATCAAACCT TAGCCAATGG TGGCCGTTTT AGGCCGCTAA CTTCTATCAC TGCGGTGCTC
GATAGCCAAA ATCGTCCTTT AGAGGTCAAT CAACTCAACC CTGTACAGGC CATGTCACCG
GCGGCGGATT ATCTAGTTCA ATATGCCATG CAGCAGGTGG TGCGCTCAGG CACGGCAAGT
CGCTTAGGTC AGGCTTTCCC CGGCGTTGCG CTTGCGGGCA AGACAGGCAC CAGTAACGAC
AGTCGCGATT CTTGGTTTGC CGGTTTTGAT GAGCGAAATG TGGCCGCTAT CTGGGTGGGG
CGTGATGATA ATGGCAAGAC TAACCTCTAT GGCAGCAGCG GCGCCATGGC GGTTTACCAA
GCATTCTTAG CGGAGCGGCC GCCACTCAGC TTACGTATGC CGGCGGTTGA AGGTGTGGTG
CAGGGCTATT TCGATCGCAG CACCGGCGTC GCCATGTCCG CCGATTGCGG TGATGTTCAA
GCCTTGCCAG CTTTAACCCA GAGTTACCAG CCTGCGGCCA ATTGTGGTCA GCCGCTTTCT
TGGTGGCAAC AGTTATTGGG GAAATAA
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| Protein sequence | MTTKAKTKSK STKTRKSGSS WLARLWSIGW KLSIVLLAFC SFYSIYLDQI IARKFEGQKW
HLPAQVFSRS MALYPGAAVN HPQLMAELKL LGYRKVANPT QVGEFSASST RIELWRRPFL
HPEGDQAELR VMISFDSYGI NSVRRMTDKR ELAVFHLEPV LLDRIIAGDG EDRVFVNTEA
MPQAIVDALI LVEDRSFYEH HGVNPFAIAR AALVNISAGR TVQGGSTLTQ QLAKNFFLSS
ERSIVRKLRE ALMALIIDFR YSKDAILEAY LNEVYMGQDK SRGVHGMGLA SQFYFGRPVA
ELTIAQQAFL VAVIKGPSYY NPWRYPERAQ ERRDLVLRLL MEDNKLTVAQ YKAAARSPLA
LRDARRSAHQ QLPAFFAVVK NELKQRYGTG LLKESGVKVY TTLDPMAQEA AEKAVVSTMK
SLESRTKNVQ VGMVVTDKYT GGIAAMVGDK VPGFSGFNRA VEIRRPIGSL VKPFVYATAL
TQGDKFTLAT PIDDNPITLK NEQGKLWSPK NVDKKFSGSV PLMTAFKQSM NVPTVNVGLK
VGVDNVAQTL ANAGWSEAIN PYPSMLLGAI NGSPLMVAQT YQTLANGGRF RPLTSITAVL
DSQNRPLEVN QLNPVQAMSP AADYLVQYAM QQVVRSGTAS RLGQAFPGVA LAGKTGTSND
SRDSWFAGFD ERNVAAIWVG RDDNGKTNLY GSSGAMAVYQ AFLAERPPLS LRMPAVEGVV
QGYFDRSTGV AMSADCGDVQ ALPALTQSYQ PAANCGQPLS WWQQLLGK
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