Gene Sden_3152 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_3152 
Symbol 
ID4019678 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp3779643 
End bp3780965 
Gene Length1323 bp 
Protein Length440 aa 
Translation table11 
GC content40% 
IMG OID637957202 
Productsigma-54 factor, interaction region 
Protein accessionYP_564151 
Protein GI91794500 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGATA TAAAACTGAA AGCGGCCATA AATAATCAGC AGCTAACATC ATGGATAGGG 
GAGAGTGCAT TTATACTGAT AACGAAACAG AGATTAGGTG CCATGGCGAA AAGCGAGCTT
CCTGTACTCA TCATAGGAGA GAGAGGTACG GGGAAGGAAA TTGCTGCACG CATGTTACAT
GATTGCAGTG TTAGAACTGG GGCACCCTTT ATCAGCATCA GCTGTAAAAA TAGCAACAAG
CAACAGCTAA TAGCTCAGAT AGAAAAGGGC ATATCCGCAG CCCAAGGAGG TAGCCTATAC
ATTAAAAATG TTGATGACTT GGTTGAAGAG GCTACTGGAT CCTTAAAAAG CTTTTGGCTT
CGCAATGATG TTTCAAAGCC AGATGTTCGC CTCATCGTCA GCAGTTCGAC TGCGCCTATG
ATCGAGGTTG AACTTATAGA AAATGAAGCT GGATTAATAA AAGAACATTT CCTACATTGG
TTGCATTACC ACTGCCTGAA TATTGAACTA CCTACACTCT CTAATCGGGA ACAAGACATT
GAAGCGCTCG TACAAGCGTA TCAATTGAGT GATCACAATA TAGGAAAACT CTCATTTCAA
GCTTGTGCTT GGGATACATT GAAGCATTAT TCTTGGCCTG AAAACGTTAA GCAATTGAAA
AGGTGTCTTG ATAAATTAGC GGTGCAGGCT GAATCATCGA TTATCAATCG ACAAATATTA
CTCAATAGTT TTCCATTAAT GAGGCAAACA CAAGCGTTAA GCGAGCTGTG TATAGACCCA
ATAAAACGGC AGATATTTAC TAAACCTTAC TTGAAAATTG ATAATCAAGC TGTCGGATTT
TCTGCCCCTG TGTTGACTGT TAACCATCAA CAAGATCAGG TGGGGTCAAC TGAAAGCGAT
AATATAGTCC ACCATGCTAA GAATCATCCT GGGTTGAATA AAGCCATTAC TTATTTGTAT
AAAAACTTCA AAGCTCATCT CACCATGGAG GAGTTGGCAA AGCATGCATG CATTAGCCCT
TCTCATTTAT CTTATCTGTT TAAGCATTAT TTAGGGATGT CATTTAAACA GGTCTTACTA
CGGCTAAGAA TTGTAAAAGC GATGGAAATA TTCTCCCAAA CCCCCCATAG GCAGGTAACA
CAAGTCTGTG ATGATGTCGG TTTTTCGGAT TTGAGTTTTT TTGTGCGTAA ATTCAAAACC
ACGGTTGGCG TTAGCCCTGG TGTTTACCGA GATCAATTTA GTCAATCAGA ATCTAGCCCA
GAACTGTTGG CGTTGGTTAA TGACTTAGCA CATCCATTAC TGCAGTTATA TATTCAACAT
TAG
 
Protein sequence
MNDIKLKAAI NNQQLTSWIG ESAFILITKQ RLGAMAKSEL PVLIIGERGT GKEIAARMLH 
DCSVRTGAPF ISISCKNSNK QQLIAQIEKG ISAAQGGSLY IKNVDDLVEE ATGSLKSFWL
RNDVSKPDVR LIVSSSTAPM IEVELIENEA GLIKEHFLHW LHYHCLNIEL PTLSNREQDI
EALVQAYQLS DHNIGKLSFQ ACAWDTLKHY SWPENVKQLK RCLDKLAVQA ESSIINRQIL
LNSFPLMRQT QALSELCIDP IKRQIFTKPY LKIDNQAVGF SAPVLTVNHQ QDQVGSTESD
NIVHHAKNHP GLNKAITYLY KNFKAHLTME ELAKHACISP SHLSYLFKHY LGMSFKQVLL
RLRIVKAMEI FSQTPHRQVT QVCDDVGFSD LSFFVRKFKT TVGVSPGVYR DQFSQSESSP
ELLALVNDLA HPLLQLYIQH