Gene Sden_3100 details

Gene Information

• Locus tag: Sden_3100
• ID: 4019626
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 3726560
• End bp: 3728518
• Gene Length: 1959 bp
• Protein Length: 652 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637957151
• Product: chemotaxis sensory transducer
• Protein accession: YP_564100
• Protein GI: 91794449
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.594551
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAATAA GAAGCAAAAT TCAGCTCAGT ATATTATCTG CATTAGTGAT CCCAGCTCTG 
ATCATTTCCG TGGTGCTCAG TAACAAGCTC AATGAGGAAG CCCAAAAGCA ATTTGTGGAT 
GTCTCCAGCC GTGAAATACG CCAAATAGAA AACGGCATCT CCATCTTGTT TAAAGACATA 
GAAGACAATG TGCGCTTTCT TGCCACCCAC CCGGTAGCCA CGAACAATAG CGCCGGGATG 
ACGTCCTATG CTAATGGGGC GGGAGGTCCT ATGACCCCAT CACGCAATGG TGGCAACGAA 
AGCCAAATGT ATGACTTGTT TGATATGTTT GCCAAGAGTC ACGATGGCCT CGCCTATATT 
TATTATGCCA ATCAAGATGG CGGTTATGTT CAGTGGCCCG AGGGCAGTAT CTCGGCCAAC 
TATGATCCCC GCACTCGGCC CTTCTACCAA CATGCGATGA AAAATGACGG TATCACCCGC 
ACCAGTGCCT ACTTTTATGC CACCGACAAT GCCACCATTA TTAGTACAGT CACTCAAGTC 
AAAGATGCTC GCGGCAACAA GATAGGTGTG CAAGGTATGG ACATGAGCCT TAAAGGGTTG 
ACTGAATACA TAAAGCAAAT AAGCTTAGGA GAAACTGGCT TTCTTATGCT GGCCGAGAGT 
GATGGCACCT TATTGGTGGA CCCCCGCCGA CCTGAGAATA ATTTCAAAAA ACTCAGCGAG 
ATAAAAGACA CTGCTTACCA GCAACTGGCC CAAATAGAAC AAGGTCAGGT CACGATTGAA 
CTAGACGGCA AGAGTTATCA GGTTAACGTG ATAACATCAA GCAAGTTTGG CTGGAAATTC 
ATTGGCTTAG TGACTATGGA TGAGATTTTT TCCACCGCCA ATTTCCTCAT CTATCTTATG 
CTGTTGATTG AAGCGATCAT GCTGGTTATT TTCATTAGTT TGTCTTTTTG GGTATCGAAC 
CTGATTACTC GCCCCATAGA TGATGTAAAA AACTTGCTGC AGGAAGTGGC ATCTGGAGAT 
GGCGATCTGA CCTGCCGCAT TGTTACCCAT AGTAAGGATG ATGAAACCGC GGAGCTTGCC 
TTCGCCTTTA ACCTGTTTGT GGAAAAAATT CGTGAGTTGA TTTTGCAAGT CATAGACAAT 
GCCAAGCATG TCAGCACCAT GGCAAGTCAA GTGTCAGGGG CTAGCGATAG CTTGTCAGTA 
GCAACGGAGG AGCAAAATTC ACAATCCCAT TCCATCGCCG CAGCCTTAAA TCAAATTTCC 
ATCACCTCAG GGCAAATAGC GCAAACCATC AAGGGAGCCG ATGAGCTATC CAAACAATCT 
AAACTGGAAG TAGATCAAGG CAGCGGCGTG ATTAAAGATG TGATCACCCG CATGAGCCGA 
GTCGCCAGTG ATATGGGCGG CCTGACAACC ACCTTGCAAG ATCTCAATAA ATCCTCCGAT 
GAAATCAATG AGATCATTAG CCTTATCACT GATATTGCCA ATATGACCAA CTTATTGGCA 
CTCAATGCCG CCATCGAGTC AGCCCGTGCT GGGGAAGCCG GCCGCGGCTT TGCCGTGGTC 
GCCGATGAAG TGCGCACCCT GTCGGTTCGC ACCTCAAAAG CCGCTACTCA GGTTTCCGAG 
CTGATTAAGG GATTGCAGCA GCAATCTAAT GCATCCTGCG GTCAAATCGA GTTATTGAAT 
CAAGAAATTA ATGCCAGTGT CGAACACGGT GCTCAGTCCT TATTGATCTT GGAAAAAATC 
ACCTCATCCA GCGAGAAAAT TTCTCAAGAA ACGGCCCATG TCGCTCACTC CATGGGAGAG 
GAAAGCAATG CCATCGAAGA AATTAACCAG AATATTCAAA ATATGGCACT GGCCATCAAT 
GAATCCACCG AAGATATCAG TCGCTTAAAA CTTGTCTCAC AACAACTGGG GGAACAAGCA 
CAAGAACTGC AAAGTTCGGT GGGTAGATTC AAAACCTAA 

 

Protein sequence

MKIRSKIQLS ILSALVIPAL IISVVLSNKL NEEAQKQFVD VSSREIRQIE NGISILFKDI 
EDNVRFLATH PVATNNSAGM TSYANGAGGP MTPSRNGGNE SQMYDLFDMF AKSHDGLAYI 
YYANQDGGYV QWPEGSISAN YDPRTRPFYQ HAMKNDGITR TSAYFYATDN ATIISTVTQV 
KDARGNKIGV QGMDMSLKGL TEYIKQISLG ETGFLMLAES DGTLLVDPRR PENNFKKLSE 
IKDTAYQQLA QIEQGQVTIE LDGKSYQVNV ITSSKFGWKF IGLVTMDEIF STANFLIYLM 
LLIEAIMLVI FISLSFWVSN LITRPIDDVK NLLQEVASGD GDLTCRIVTH SKDDETAELA 
FAFNLFVEKI RELILQVIDN AKHVSTMASQ VSGASDSLSV ATEEQNSQSH SIAAALNQIS 
ITSGQIAQTI KGADELSKQS KLEVDQGSGV IKDVITRMSR VASDMGGLTT TLQDLNKSSD 
EINEIISLIT DIANMTNLLA LNAAIESARA GEAGRGFAVV ADEVRTLSVR TSKAATQVSE 
LIKGLQQQSN ASCGQIELLN QEINASVEHG AQSLLILEKI TSSSEKISQE TAHVAHSMGE 
ESNAIEEINQ NIQNMALAIN ESTEDISRLK LVSQQLGEQA QELQSSVGRF KT